Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00418 ATGGACTTGACCACAACAATAGATGCTGATGATGGTTGCAAAACCACCCAACCAAACCACCCCACCAACAATAACACCCCAAAGACTCTATCTTTCACCAACGGCACACTCCGCCGCCACCCCTCAGCCTTGGCTCCACCGCCGCAACCGCCGTCCACGGCGGTTGCCTACAAAGAATGCCTTAAAAACCATGCTGCAAGCATAGGTGGCCATGCACTTGATGGGTGTGGTGAATTCATGCCTTCTTCTTCCACCAATGTCTCAGACCCCCGTCTGCTAAAATGCGCCGCGTGTGGCTGCCACCGCAACTTCCACCGCCGTGAACCCCACGACAACAACCTTAACCTCCACCCCAACAACCTTAACCTCAACCAAAACAACCTTAGCCTCAACAAAAACAACCTTAGCAACGCAAACAAAAACAGCCCAACTTTTTTGAGCTGCATCTACACCACCCCCTCAGCGCCACCACCACTCTCACACCGAGCAATGAGTCAAAGCACGAGTCCGAGTCTGAGTTCGAGTCCGAGTCACAGCCCGAGTCCAATCTCAAGCCCTTCACCTCCACCACTCTCGCACGTGCCACCCTTTCACGCTTCAGCACCCCACATGCTTCTAGCCCTCGGAACCGGTTCTTATTCTGCACCCTCTGATGAAACCCTTCATAAAGGTCTCAACTTTTCCACGGTGGTGCTGAAAAACAGTGAGAGCCACCACCCCAAGAAGAGGTACAGGACCAAGTTCAGCAAGGAGCAAAAAGAGAAGATGTTTAGCTTTTCTGAGAAACTGGGGTGGAGAATGCAGAAAGGGGATGATGGTTTGGTTCAGAATTTCTGCAATGACATTGGGGTCTCTAGAGGGGTCTTCAAGGTTTGGATGCACAACAACAAGAACACTTTTAGGAAGAAATCAGATCAAGTTCCAAATGCAAATGCAAATTCAAATTCAAATGAAAACGCTACTCAAAGCAATGAGGATCATGATGATGGCAATGTCAATGGTAATAGCAATGGCAATGGTGGATTTGATAGTGATATCAACAACCCTTACAACCCAAATGCCACCACCAACAATGACATTCACATGAATGAAGATGGGTGTGTCAATGTTCATGTTTCTCTTAATCATGAGTTATCATCTTAG 1143 0.4838 MDLTTTIDADDGCKTTQPNHPTNNNTPKTLSFTNGTLRRHPSALAPPPQPPSTAVAYKECLKNHAASIGGHALDGCGEFMPSSSTNVSDPRLLKCAACGCHRNFHRREPHDNNLNLHPNNLNLNQNNLSLNKNNLSNANKNSPTFLSCIYTTPSAPPPLSHRAMSQSTSPSLSSSPSHSPSPISSPSPPPLSHVPPFHASAPHMLLALGTGSYSAPSDETLHKGLNFSTVVLKNSESHHPKKRYRTKFSKEQKEKMFSFSEKLGWRMQKGDDGLVQNFCNDIGVSRGVFKVWMHNNKNTFRKKSDQVPNANANSNSNENATQSNEDHDDGNVNGNSNGNGGFDSDINNPYNPNATTNNDIHMNEDGCVNVHVSLNHELSS 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00418 380 MobiDBLite consensus disorder prediction 157 180 - -
Pste3g00418 380 MobiDBLite consensus disorder prediction 300 361 - -
Pste3g00418 380 NCBIfam homeobox domain, ZF-HD class 241 298 IPR006455 -
Pste3g00418 380 Pfam ZF-HD protein dimerisation region 55 109 IPR006456 -
Pste3g00418 380 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 24 299 - -
Pste3g00418 380 MobiDBLite consensus disorder prediction 1 51 - -
Pste3g00418 380 MobiDBLite consensus disorder prediction 302 361 - -
Pste3g00418 380 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 57 108 IPR006456 -
Pste3g00418 380 MobiDBLite consensus disorder prediction 1 38 - -
Pste3g00418 380 MobiDBLite consensus disorder prediction 157 196 - -
Pste3g00418 380 FunFam Zinc-finger homeodomain protein 2 229 302 - -
Pste3g00418 380 SUPERFAMILY Homeodomain-like 234 302 IPR009057 -
Pste3g00418 380 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 57 108 IPR006456 -
Pste3g00418 380 Gene3D - 231 302 - -
Pste3g00418 380 MobiDBLite consensus disorder prediction 181 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00418 Pste-Chr3 2362199 2363341 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00418 54 300 ZF-HD Transcription Factor Family AT1G69600 42.800 5.24e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pste3g00418 ZF-HD_dimer 3.3e-28 No_clan