Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00415 CTCTTCCCCCTTTTCTCGCTCTAACCCAAACCAAACCGTTCTCTCTCTCTCCATTACAAATTTTACAAATTCCCCTTTTTTCTTCTGTGAGTCTCCGATACCCTCATTTTCTTGGGATCCACCGATTCCATTCCACTTTAGGGATCGATGAGCGATCATCTGGTGCTGTTCGTGGACAGACTGGTGCGGCCCGTGCCGGCGGTCGAGCCGCCGGTCCAGCCCGCGCCCGAGCCCGTGACGCCCGTTGACGAGGCCACGGCGGGGCCGTCACGCGCCGCCGTGGCGGAGGACGACGGAGACGGCGAGGACGCGCCGCTGCTGCCGCTGGCGGAGTGTCGCATTTGCCAAGAGGAGGACGGCGTTAACAATTTGGAGTCCCCTTGCTCCTGCAGCGGTAGTCTCAAGTATGCTCATAGAAAGTGTGTTCAGCATTGGTGCAATGAGAAGGGAGACATAATTTGTGAGATATGTCATAAGCCCTATGAACCTGGATATACTGCCCCACCACCTCGTCCCCAGCCAGAAGAAACTACCATTGATATAGGTGGAGGCTGGACAATCTCTGGCACACCATTGGACTTGCGTGATCCTCGACTCTTGGCAATTGCAGAGGCAGAACGGCAATTCTTGGAAGCTGAATATGATGGATATGCAGCTTCTAGTGCTAGTGGAGCTGCATTTTGCCGTTCTGTTGCTCTCATTTTAATGGCTCTTTTACTTTTAAGGCATGCACTTTCTGTCACGGACACTGATGCCGAAGATGATCCATCCACTTTTTTCTCTCTTTTCTTGCTTCGAGCTGCTGGTTTTCTTCTACCTTGCTACATAATGGCCTGGGCAATCAGTATTCTGCAACGCCGGCGACAAAGACAAGAGGCTGCAGCACTAGCAGCAACACAAGTTGCTTTTGTTCTACAATCTGGGCAGCGAAGGGGTCTTCAGTTTGCCATAGCTCCAGGACCAGCAATGAATTCACACCAGGAACATGTTTAATTTGTACGCCATTGTATGTTACACTGGCATGTGCACCATGCAAAGAAGGCTTGTTGGAATGCCATGCAATTTTATTACTCATCATTTTTCTCAGCTCTATTGTACGTGCATATTTCTTAGCTTGAGCTACTACTGAGATGGTGCTTCATATTTTGGGGTCCATAACCTTCGAAAAAGAGAACATCTCATTTGTTATATTGCAGCTTCAAGTCTTTGAAAGTTGTAGCAATTTTAATTATACTAGAGAAGTTCACATGTCATTCCATAGCAATAATAGTGTCAGTGCTTCTTTAGCTGCTA 1293 0.4857 MSDHLVLFVDRLVRPVPAVEPPVQPAPEPVTPVDEATAGPSRAAVAEDDGDGEDAPLLPLAECRICQEEDGVNNLESPCSCSGSLKYAHRKCVQHWCNEKGDIICEICHKPYEPGYTAPPPRPQPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLEAEYDGYAASSASGAAFCRSVALILMALLLLRHALSVTDTDAEDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFAIAPGPAMNSHQEHV 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00415 281 ProSiteProfiles Zinc finger RING-CH-type profile. 55 115 IPR011016 GO:0008270
Pste3g00415 281 Coils Coil 151 171 - -
Pste3g00415 281 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 242 IPR033275 -
Pste3g00415 281 SMART ringv_2 62 109 IPR011016 GO:0008270
Pste3g00415 281 FunFam RING/FYVE/PHD zinc finger protein 51 119 - -
Pste3g00415 281 SUPERFAMILY RING/U-box 62 113 - -
Pste3g00415 281 Pfam RING-variant domain 63 108 IPR011016 GO:0008270
Pste3g00415 281 MobiDBLite consensus disorder prediction 18 53 - -
Pste3g00415 281 CDD RING_CH-C4HC3_MARCH 63 109 - -
Pste3g00415 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 117 IPR013083 -
Pste3g00415 281 Pfam Protein of unknown function (DUF3675) 114 232 IPR022143 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00415 Pste-Chr3 2322123 2326575 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00415 51 109 C3H Transcription Factor Family AT2G37950 43.548 6.63e-09 53.1