Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00407 GCTTAACAAAAAGACAAAGACAGAGGTTTGGGGAAGTGTGGAAGCGGCATGAGCAGCGTAATAGTGACGACGGGAGCGCAGATCCTCCGGCACACAGGTGCATTCACATGGTCCGTCCTCGGGCAATCGGAACTCCGGGAGCAGCTGACGGGCACACTCCTCCGTGACAGCCCAATCTCAGAGCAAAAACAACTTAACCTGGCGGCAGAGAACCTAGAAAGAGGCATATCCTTATCGAGTTCCTCGTCCCTCACCCTGGCCGAGAAGCTCCTCCTTCCTCTCCCTCACTTGCCCCTCTCCTGGCTCCTCCTCTGCCTCCTCCACGCACTCTGTAATCGCCCAATCGAATCTGCCCTAAGCCTCCTCCGAATCTTCGACTCCAACAAGGCTTCCCTGGCCCGCTCCGAAATCGCTCCCCATTTCTACGACCGCCTCTTCTCTCCGCACCTCTTCCCAGTCTTCGGGTGGTTCCATGAACAGAGGACGCAGATTCTCTCATCCAGCGGCGGCGGCACCAGTGCCAAGGTGTTGTCCAAGATTAGCCAAGAGCAGGCCGCCAAGCTGAGGGAGGTGGAAAGAGAGTACCAGCAGGTTCTGGACCACAACTGCAGGCTTCTCGCCGTCTACTTCAAAGAGGTTTTGGTCAACCAAAACGCCCTTACTCCACCCCCTTTGATACTCAAGACCCTCGCTGAAGGCGCCATCGTCGACGACGTCAACAACACAAAGGACGACATCATGCAAATGCATATTAATGCTTTCCACAACGGACTCCATAATCCAATGTGGTCCGAAAGGGAAGTATCTGTTGAATTTCTGAGCCCCAGATCTTCGCCCTCACCAATTTATCCCGAGAGAGTACTCAAACCCCAAAATCTTTCAAAAACTTCGACTACTCCATTCTATTTAAACTCAACAGCTGAAACCGAATTTTCTTTAGAAGAGAGTTTGCTTAGTTGTTCTTCAGATTCTGAGGAAGAATATGAGGAAAAGGATAAAAGTATTGCCTTGTTGGAGCCTCGAGAAAGCCAAATTCAAGAACAAAAGCTAACCATCTTCAAACAATCCAGGAGTAGTTCCCCAGATTATCCAATGGCTGACTTGGATACCCCGCTGCATGGAATTGGGAAGCATGCACCTCCCAAGGACTTTGTCTGTCCAATAACAAGTCACATATTTGATGATCCAGTGACTCTTGAGACTGGTCAAACATATGAACGTAAGGCAATAGAGGAATGGTTCAATAGAGGGAGCTTAACCTGTCCAATCACTCGCCAGAAGCTACAAAACACTCAGCTACCCAAAACAAATTATGTGCTCAAACGACTTATTGCAAGCTGGAAAGATCGCAATCCCCATTTGGTCCCACCACCATACGAAGATACAGAGGCAGTTTCGAAGTCAACAGTGCCTTCAACTTGTTCTAAGATTGGTATAACACAAGCCACCGTTGATGGGATGATGAGTGAGTTACGGTCTGCAATCAATAACCTGTACATGTCAGAGATTCTCCAGGAATCTGAAGCGGCCGTCCTTCAAATTGAAAAGTTCTGGAGAGGAGTGAATCTAGGAGTGGATATCCATAGTATGCTATCAAAACCTGCTGTCATCAATGGATTTATGGAGATCCTTTTCAATTCTGTTGAGCCCCAGGTGCTACGAGCAGCAGTTTTCCTTCTGGCCGAGATGGGGTCTAGAGACAATGCTGTTATTAAAACTCTCACTCGTGTGGACACTGACGTGGAATGTATCATTGCTCTTTTCAAGAACGGGTTGACAGAGGCTGTTGTGTTGTTGTATCTCCTAAATCCTTCCACTACGACTCTTGCAGAGACGGCCATACTGGAGTCTCTCATAGCATTTTTTGATAAGAAAGAGGAAGACTTGCTTAAGATGTGTTTCAAGCCCAAGACAGCAGCAGTGCTTTTACTTGCACGGATTGTTGGAAGCAGTGAAGAGATAATTGCATCTTCTGTTGTCAATACTCTTTTCTCTGAAAAAGCATTTGGAGTTCTCCTTGGCAGTTTGGGAGCTGATTTGGCAAAGGAGAGGATTGCGGCAGTGGAGATCTTATTGAGATGCATGGAAGAAGATGGGACTTGCAGGAACAGCATTGCTGATAAAGCAGAGCTTTCACCTCTTTTGGAAACCTTAGTCGGTGCAACTGAAGGAGAGCGTTTTAAGATTATTAAATTCTTTTCTGAGTTAGTCAAATTAAATAGGAGGACATTCAATGAACAAATCCTCCACATTATAAAGGAAGAAGGACCTTTTAGTACAATGCATACTCTCCTCATTTATTTGCAGACAGCCCTTCAAGATCAATGTCCAGTTATGGCTGGTCTCTTACTCCAACTTGATCTTCTGGTTGAGCCAAGAAAAATGAGCATATACCGGGAAGAGGCTATGGATACTCTTATTTCATGCCTGAGAAACACAGATTACCCTGTCACCCAATTAGCAGCTGCTGAGACAATCATGTCACTTCAAGGGAGTTTCGACTTCTCTGGAAACCCTCTAACAAGAGAAGTCCTCCTTAGACGTGCAGGTATCAACAGAAGTTCAAGAAGTCTCGTGCATGTGGATCAGATCAGCAAGTTCAGCCAGGAAATTGAAATAACTCCAGAAGAAAAGAAGGCAGCTGATGATTGGGAAAGAAGAATTGCATATATTCTTGTTAGCCATGAGTTTGGCACTCTTTTTGAGGCTTTAGCAGATGGCATGAAGAGCCGAAATCCAGAACTACGATCAGCATGCTTTATATCAGCTACATGGCTCATACACGTGTTGAATATTCTACCAGATATAGGAGTACAAGTAGCAGCTCGTGCCTGCTTGCTGAAGCAGTTCATAGCTAAATTAAATTCTGCTAAGGATGTAGAAGACAGAATCCTTTCTATGCTTGCTCTCAATACCTTTCTTCATTTCTCTGATGGCTTAGGTGGTCTAACTTCCTACACTAAGGGTATCTTAAAAGGGTTGAGAGAGCTAAAGAGATCCTCTCCCTTAGCATCTAAAATGCTAAAAGTTCTGGTTGAAGAAAATGAATCCAAAGGGGACATTTGGATACATAAAGAGCTCATAAAAGAAGACTGCAGGGAGAATGGAGAGGTGATGTCTGTCATTTGCTTTAAGGATAAAGTTTTTTCGGGCCATACAGATGGCACTATTAAGGTATGGACATTAAAGGATAACTTACTCCATCTGTTGCAAGAGATCCAAGAACATACTAAGGCTGTGACAAACTTGGTGATTTCAGAATCTGATGAAAGACTATACAGCGGTTCACTTGACCGAACTGCAAAGGTCTGGTCTATTGGGAAGGTAGCGATACATTGTGTACATGTGCATGATATGAAAGACCAGATTCATAACTTAGTTGTAACCAATGGCTTAGCTTGTTTCATTCCGCAGGGGACAGGTATCAAGGTTCAGTCATTGAATGGAGAATCAAAGTTGTTAAATTCTAGTAAATATGTGAAGTGCTTGGCTCATGTTAATGGGAAATTATACTGTGGATGCCATGACAGTAGTGTTCAGGAGATACATCTGGCCACTGGAACAGTCAGCGCTATTCAAAATGGTTATAAAAGATTACTTGGGAAAGCAAATCCTATTCATGCACTGCAAATTCATGGTGAACTTATATATGCAGCTGGCTCCTCCTTGGATGGATCTGTGGTAAAGATATGGAACAATTCCAATTACAGTATGGTCGGATCAATGCAAACTGGATCTGAAGTGCGGGCTATGGCAGTGAGCTCAGAATTCATTTATTTGGGGTGCAAAGGAGGTAATGTGGAAATTTGGGATAAGAAGAAACACAACAGAGTTGAGACGTCGCAAATGGGTACGAATTGTAAGGTTAACTGCATGGCTTTAGACAACAATGAAGTTTTGGTGATTGGAACTTCAGATGGACAAATTCAGGTTTGGGGAGTGAATTAAAAGATGCTCACAGACGAACTTGGCAATATCACATTCATTAAACCTTAGAAATATTTTCATTCTTTTGGTTCCTTGTGAGCTGTATATAGCTCAAAGTTTATACTTTAGACTTCCAAGTGCTTTGTATATAGGTTAACTCGTAGATATGTTAGATATGTGAACAGTTCGCTATATCATCTGCATGAGACTGTCTTTTATATATGTATGCATTCTTCCTTC 4167 0.4384 MSSVIVTTGAQILRHTGAFTWSVLGQSELREQLTGTLLRDSPISEQKQLNLAAENLERGISLSSSSSLTLAEKLLLPLPHLPLSWLLLCLLHALCNRPIESALSLLRIFDSNKASLARSEIAPHFYDRLFSPHLFPVFGWFHEQRTQILSSSGGGTSAKVLSKISQEQAAKLREVEREYQQVLDHNCRLLAVYFKEVLVNQNALTPPPLILKTLAEGAIVDDVNNTKDDIMQMHINAFHNGLHNPMWSEREVSVEFLSPRSSPSPIYPERVLKPQNLSKTSTTPFYLNSTAETEFSLEESLLSCSSDSEEEYEEKDKSIALLEPRESQIQEQKLTIFKQSRSSSPDYPMADLDTPLHGIGKHAPPKDFVCPITSHIFDDPVTLETGQTYERKAIEEWFNRGSLTCPITRQKLQNTQLPKTNYVLKRLIASWKDRNPHLVPPPYEDTEAVSKSTVPSTCSKIGITQATVDGMMSELRSAINNLYMSEILQESEAAVLQIEKFWRGVNLGVDIHSMLSKPAVINGFMEILFNSVEPQVLRAAVFLLAEMGSRDNAVIKTLTRVDTDVECIIALFKNGLTEAVVLLYLLNPSTTTLAETAILESLIAFFDKKEEDLLKMCFKPKTAAVLLLARIVGSSEEIIASSVVNTLFSEKAFGVLLGSLGADLAKERIAAVEILLRCMEEDGTCRNSIADKAELSPLLETLVGATEGERFKIIKFFSELVKLNRRTFNEQILHIIKEEGPFSTMHTLLIYLQTALQDQCPVMAGLLLQLDLLVEPRKMSIYREEAMDTLISCLRNTDYPVTQLAAAETIMSLQGSFDFSGNPLTREVLLRRAGINRSSRSLVHVDQISKFSQEIEITPEEKKAADDWERRIAYILVSHEFGTLFEALADGMKSRNPELRSACFISATWLIHVLNILPDIGVQVAARACLLKQFIAKLNSAKDVEDRILSMLALNTFLHFSDGLGGLTSYTKGILKGLRELKRSSPLASKMLKVLVEENESKGDIWIHKELIKEDCRENGEVMSVICFKDKVFSGHTDGTIKVWTLKDNLLHLLQEIQEHTKAVTNLVISESDERLYSGSLDRTAKVWSIGKVAIHCVHVHDMKDQIHNLVVTNGLACFIPQGTGIKVQSLNGESKLLNSSKYVKCLAHVNGKLYCGCHDSSVQEIHLATGTVSAIQNGYKRLLGKANPIHALQIHGELIYAAGSSLDGSVVKIWNNSNYSMVGSMQTGSEVRAMAVSSEFIYLGCKGGNVEIWDKKKHNRVETSQMGTNCKVNCMALDNNEVLVIGTSDGQIQVWGVN 1299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00407 1299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 364 439 IPR013083 -
Pste3g00407 1299 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1266 1299 - -
Pste3g00407 1299 SUPERFAMILY ARM repeat 479 1097 IPR016024 -
Pste3g00407 1299 SUPERFAMILY RING/U-box 363 441 - -
Pste3g00407 1299 SUPERFAMILY WD40 repeat-like 1030 1298 IPR036322 GO:0005515
Pste3g00407 1299 Gene3D - 1096 1299 IPR015943 GO:0005515
Pste3g00407 1299 SMART WD40_4 1170 1216 IPR001680 GO:0005515
Pste3g00407 1299 SMART WD40_4 1050 1089 IPR001680 GO:0005515
Pste3g00407 1299 SMART WD40_4 1259 1297 IPR001680 GO:0005515
Pste3g00407 1299 SMART WD40_4 1008 1045 IPR001680 GO:0005515
Pste3g00407 1299 SMART WD40_4 1219 1255 IPR001680 GO:0005515
Pste3g00407 1299 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1057 1090 - -
Pste3g00407 1299 Gene3D - 1008 1095 IPR015943 GO:0005515
Pste3g00407 1299 Coils Coil 662 682 - -
Pste3g00407 1299 Gene3D - 505 984 IPR011989 -
Pste3g00407 1299 ProSiteProfiles Trp-Asp (WD) repeats profile. 1057 1090 IPR001680 GO:0005515
Pste3g00407 1299 ProSiteProfiles Trp-Asp (WD) repeats profile. 1280 1299 IPR001680 GO:0005515
Pste3g00407 1299 Pfam U-box domain 365 435 IPR003613 GO:0004842|GO:0016567
Pste3g00407 1299 CDD RING-Ubox_PUB 365 417 IPR045210 -
Pste3g00407 1299 SMART Ubox_2 367 431 IPR003613 GO:0004842|GO:0016567
Pste3g00407 1299 ProSiteProfiles U-box domain profile. 363 438 IPR003613 GO:0004842|GO:0016567
Pste3g00407 1299 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 1298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00407 Pste-Chr3 2206379 2214116 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00407 365 440 U-box Gene Family AT5G42340 47.368 1.83e-16 82.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g00407 3 2206379 2214116 Pste3g00407 3 2206379 2214116 ECH