LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste3g00404	AGGGATGTAGAAGTGTTGGGAAAGGGGAGTAAGATGGATCGTCCACCGAAGAGCTGGAGCATCCATACCCGATCCGAGATAATCGCGAAATACGAGGTGATGGAAAGGGTGGGGTCTGGAGCGTACGCGGACGTGTACAGAGGGCGTCGGCTCTCGGACGGCCTGATAGTAGCACTGAAGGAGATCCACGACTACCAGTCGGCGGTGAGAGAAATGGATGCGTTGCAGCTCCTGCAGGGCTCCCCAAACGTGGTCGTTTTGCACGAGTGCTTCTGGCGCGACGACGAGGACGCCGTCCTGCCGACTTGGCCACCGTCATCGCCGATGCCGCCAAGGCCAACCAACCCTCCCCACCCCGAGCTCAAACGCTGGATTATCCAGATTCTCTCCGGCATCCACGCCTGTCACCGCCTCATGGTCCTCCACCGTGATTTGAAGCCCTCTAACCTCTTAATTTCCGAGCACGGCCTCCTCAAGATTGCTGATTTCGGACAGGCAAGGATTCTAACGGAACCTGGTATTGATGCTTCTAATAATCACGAAGAATATTCTAGAGTTTTTAACGACATTGATAATAAGGGCACAAGTGACGGAGATATGGAGGATAAAGAGGAAGGGAAAGAACTTGATTGTTTCACGTCATGTGTTGGAACTCGTTGGTTCAGGGCTCCTGAGTTGCTTTATGGGTCCAGAGACTATGGTTTGGAGGTTGATTTGTGGTCCTTGGGATGTATCTTTGCAGAGCTTTTAACTCTGCAACCTTTGTTTCCTGGAACTTCAGATATTGACCAGCTTAGTAGAATCATTGGCGTTTTGGGTAACCTTGATGAGAGTGCTTGGGTTGGTTGTTCTAAACTTCCTGATTATGGGATAATATCCTTTAGCAAGGTGGAGAACCCTGCTGGTCTTGAAGCATGTTTGCCCAATCGGTCCCCAGACGAAGTAGCTCTGGTGAAAAGACTGGTTTGTTATGATCCTGCTAAAAGGGCTACAGCAATGGAGTTACTTCATGACAAATACTTTACTGAAGAGCCTCTTCCTGTTCCAGTTTCTGAGTTGCCAGTTCCTCTGTCCAGAAAAGGAAAAGATGATGATTCTTCTGGTGGGTGGGATCATTTTGATGAAATGGATTCTGATTCTGATTTTGATCAGTTTGGCCCTCTCAATATCACCAGGACTCGAACAGGTTTCTCTATACAATTTCCTTGATGAATTCAAGGTAATTATGTTCTTGCAACCGCCTTTGCCTTTTCTATTGTGCTGCTCATCTGGTATTTCTTCGCGGAAATTCAATTCTTTTTTAACTCTTATTTGACATTCACATGTGAACAAATGGATGAGTTATTTAAATATATACACGATAGTTGTCTTACTATGATATTGGTAGCACTCTCAGTTGATACTATTTCTAGTCCTTTATTATAGAATTTAAATAACCAATCGAACATGATTAAAAAAATTGGTTTTTAGTTCTAATAATAAATATGCCTTAAATTTTATATAAATATTTCTGTATTTTAAGAAGAAAAAAAAAGAGTATTTATATATACAATGAAGGGTATGATCGTAAAGAAAAACAAACACATTAAATATTAGTCTACAGGAGATATTACAATATCATGC	1623	0.4325	RDVEVLGKGSKMDRPPKSWSIHTRSEIIAKYEVMERVGSGAYADVYRGRRLSDGLIVALKEIHDYQSAVREMDALQLLQGSPNVVVLHECFWRDDEDAVLPTWPPSSPMPPRPTNPPHPELKRWIIQILSGIHACHRLMVLHRDLKPSNLLISEHGLLKIADFGQARILTEPGIDASNNHEEYSRVFNDIDNKGTSDGDMEDKEEGKELDCFTSCVGTRWFRAPELLYGSRDYGLEVDLWSLGCIFAELLTLQPLFPGTSDIDQLSRIIGVLGNLDESAWVGCSKLPDYGIISFSKVENPAGLEACLPNRSPDEVALVKRLVCYDPAKRATAMELLHDKYFTEEPLPVPVSELPVPLSRKGKDDDSSGGWDHFDEMDSDSDFDQFGPLNITRTRTGFSIQFP	402

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste3g00404	402	ProSiteProfiles	Protein kinase domain profile.	31	341	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste3g00404	402	MobiDBLite	consensus disorder prediction	357	373	-	-
	Pste3g00404	402	Pfam	Protein kinase domain	31	341	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste3g00404	402	SUPERFAMILY	Protein kinase-like (PK-like)	24	347	IPR011009	-
	Pste3g00404	402	MobiDBLite	consensus disorder prediction	352	373	-	-
	Pste3g00404	402	FunFam	Cyclin-dependent kinase F-1	22	101	-	-
	Pste3g00404	402	Gene3D	Transferase(Phosphotransferase) domain 1	112	347	-	-
	Pste3g00404	402	Gene3D	Phosphorylase Kinase; domain 1	22	101	-	-
	Pste3g00404	402	PANTHER	CELL DIVISION PROTEIN KINASE	30	347	-	-
	Pste3g00404	402	SMART	serkin_6	31	341	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste3g00404	402	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	140	152	IPR008271	GO:0004672\|GO:0006468
	Pste3g00404	402	ProSitePatterns	Protein kinases ATP-binding region signature.	37	60	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste3g00404	Pste-Chr3	2169826	2171863	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste3g00404	212	402	Core Cell Cycle Gene Families	AT4G28980	67.539	2.75e-91	281

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CCRK	Pste3g00404		Pkinase	2.2e-48	CL0016