Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00374 ATGCCAGATATTTTGCGGTTCATAATAGTGAGAAAGGGAGAATGGTTTCGTTTAAGGGATAATGAAGGAAGGACTGCTCTTCACTATGCTGCATCTATAGGTTACCTTAATGCTGTTATGGATTTGCTTGGATGTTGTATTTCCTCTGATATGGAAAGAGACAAAGATGGCCTCTTTCCTCTTCATTTGGCTTCTGCAAGTGGGCATGTTGAAGTGGTAAAGAAACTGTTGCAATACTGTCCAGATCCTAGAGAATTACTTGATAATAATGGTCAAATTTTGTTCACACTGCTGCTAAAGTTGGAATGCTTAATGTGGTGA 321 0.3894 MPDILRFIIVRKGEWFRLRDNEGRTALHYAASIGYLNAVMDLLGCCISSDMERDKDGLFPLHLASASGHVEVVKKLLQYCPDPRELLDNNGQILFTLLLKLECLMW 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00374 106 SMART ANK_2a 22 51 IPR002110 GO:0005515
Pste3g00374 106 SMART ANK_2a 56 85 IPR002110 GO:0005515
Pste3g00374 106 Pfam Ankyrin repeats (3 copies) 4 79 IPR002110 GO:0005515
Pste3g00374 106 ProSiteProfiles Ankyrin repeat profile. 56 78 IPR002110 GO:0005515
Pste3g00374 106 ProSiteProfiles Ankyrin repeat region circular profile. 56 78 - -
Pste3g00374 106 ProSiteProfiles Ankyrin repeat region circular profile. 22 43 - -
Pste3g00374 106 SUPERFAMILY Ankyrin repeat 8 97 IPR036770 -
Pste3g00374 106 Gene3D - 2 101 IPR036770 -
Pste3g00374 106 PANTHER NO MECHANORECEPTOR POTENTIAL C, ISOFORM D-RELATED 18 92 - -
Pste3g00374 106 ProSiteProfiles Ankyrin repeat profile. 22 43 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00374 Pste-Chr3 1977624 1977944 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00374 3 79 Ion Channels AT2G26650 41.558 1.27e-07 46.2