Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00373 ATGGCAAGCAAGAGAAAAAGATGGGAAAGTGAAGGAGTAGAAAAGAGCAATGAAGAAGGGAATAACATTAATGTTGAATGGAAGCAACTAAGGGAAGAGGCAGCATCAATGGCTGCTGCTATACTTGGTGCAAGAAGAGCTAAGAAACGTTACATTGGTGTGAGACAAAGGCCTTCAGGGAGATGGGTGGCTGAAATCAAAGACACCATTCAGAATATTAGGCTTTGGTTAGGGACTTATGACACTGCTGAAGATGCTGCAAGGGCTTATGATGAAGCAGCACGTTTGCTTCGTGGTGCTAACACTCGCACTAATTTCTCCCCTTCTCAATGTTCTTCTTCCCCTGCTCTTCCTCCAAAGATTGCTAAACTTCTCCTTGTTAGACTCAAATCTAGAAACATGATGGTTACTACTACTCCTTTTCCTTGTAGTAGTAACCACTATGAAGAAGAAAACAAAGTAGAATCCAAACCAGAACCAGAACCTCAATTTTATCACCAAATAGAAGAACCCTTTTATGGAAATTTTTTAGATATGGTAGGAATAGTTGGGGTTGATGATGAAAGTTACCATGGTGCTAGTAGTAGTTCTTCTGCCATAACTACTTGTGACTATGGTTTTGGTACTAATGAAGAAAATTCTATCCAAGAGGGTAGTTGGGAGGATTTCAAATTAGGGGAAAGAAATGGGGTTAATGTTGTTGTTGAAGAAAGTTATTGTGGTGCTAGTTATAGTTCTTATGCTATAACTACTTGTGGCTATAATTCTGGTGGTACTAACGAAGAAAATTCTAACCAAGAGGGTAGTAGGGAGGATTTCAAATTAGGGGAAGGAAATGGGGTTAATGTTGTTGAAGAAAGTTATTATGGAGCTAGTTATAGTTGTGACTATAATATTGCTACTACTAATGAAGAAAATTCTAACCAAGAGGGTAGTGGGGAAGATTTGAAGTTTGATTATCATTCTGGTGATAATGTTTATGATGAAAATAACCAGATTGTGATGAGTGGTAAAGGAGAGTTTGAAGAGTGTGATGTTGGGGTAAGAGATTTTCAGTTTTTGGACATTGCTGGATCATTGAGTTATTCTTTGTCTCCATTTGAGATAGCTGAGGAGATGGTGGGACCTATAGAGGAAGAGAAAGATGAGGTTGGTGATTCACTATTAGGTAGAGAAAGTTTCAGGATGAAGTATGAAAGAAAATTCTCAGCTTGTCTTTACACCTTAATTGGGGTGTCCGAGTGTTTGAGGCTACAAGTTGAACCAGAAAATGCAAAGGATTTGGAAAAATTTTGA 1296 0.3835 MASKRKRWESEGVEKSNEEGNNINVEWKQLREEAASMAAAILGARRAKKRYIGVRQRPSGRWVAEIKDTIQNIRLWLGTYDTAEDAARAYDEAARLLRGANTRTNFSPSQCSSSPALPPKIAKLLLVRLKSRNMMVTTTPFPCSSNHYEEENKVESKPEPEPQFYHQIEEPFYGNFLDMVGIVGVDDESYHGASSSSSAITTCDYGFGTNEENSIQEGSWEDFKLGERNGVNVVVEESYCGASYSSYAITTCGYNSGGTNEENSNQEGSREDFKLGEGNGVNVVEESYYGASYSCDYNIATTNEENSNQEGSGEDLKFDYHSGDNVYDENNQIVMSGKGEFEECDVGVRDFQFLDIAGSLSYSLSPFEIAEEMVGPIEEEKDEVGDSLLGRESFRMKYERKFSACLYTLIGVSECLRLQVEPENAKDLEKF 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00373 431 MobiDBLite consensus disorder prediction 1 21 - -
Pste3g00373 431 FunFam ethylene-responsive transcription factor RAP2-11 49 108 - -
Pste3g00373 431 Gene3D AP2/ERF domain 49 108 IPR036955 GO:0003700|GO:0006355
Pste3g00373 431 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Pste3g00373 431 CDD AP2 49 109 IPR001471 GO:0003700|GO:0006355
Pste3g00373 431 Pfam AP2 domain 50 99 IPR001471 GO:0003700|GO:0006355
Pste3g00373 431 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 22 269 - -
Pste3g00373 431 MobiDBLite consensus disorder prediction 1 16 - -
Pste3g00373 431 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Pste3g00373 431 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Pste3g00373 431 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Pste3g00373 431 SUPERFAMILY DNA-binding domain 50 108 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00373 Pste-Chr3 1974208 1975503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00373 48 107 AP2-EREBP Transcription Factor Family AT5G19790 76.667 4.51e-27 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pste3g00373 AP2 6.4e-14 CL0081