Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00345 ATGTTCTGTTCGCGACCCACAGTCTGGTATTTGAGTTTACAAAACCACATTGTCCATATGAAATGTAACGACTTTTTTATTTGTTGAAGTGAAGGTAGAGGTGAACCATAAAAAAACAAAACTTTTGTGTGAACATTACTGTTAGTTGTTTGTTCTGGGTCTTTGGACAGCTGGAATTTAAGCTCAAGCAGCCACTTGTCATGTAAACATTTCTGAATTCCATAATTGAGACTTCATTTGGTGTAATTCCATAGTTGAGACTTCACTTTCTATTTTCCTTTTTGTGTTTTATATATTTGGCATAGAACATTGGATGAAGTAGTGGGATTTAAGATTAAATAATGTTTCTGCAAATTTGGTTTTTAACTTTATGCCATTGTGCCATCCATGTAGCTGATCTTGCCAAGTGTCATAAGGCTTAGTTTTTGTTGTATATATTTGGCATAGAGTGGAGTGATAACTCATGCAGGACGCAACTTTGATCCTCCCACAAATATAAACAGCCCTTTAATGTTATTTCTCTCTGCTTGTCAGGCAAGGCTCATTCAATCACAGTTTTTAGCAATTAGAAATACATTTAGAAGAGAAGTTCCTTGCCAAAGTTCTACAATTTGTTCTTATTTCTCTCCAGTTTCTGCTGTTCAGAGCCTTTCTTCCAGTGTGCAAAGTACTCCTGAAAAAAATGGCCATTCAGACTGTGCTTCAAAAAGTGCAGAACTCCTGCAGTTCCTAAAATGTGGTCCAAAGAAGGAACTTCTTCGAATGTGTTTTGACAAGGACAAAGAAAACATTTCATCAAGAAGCAGGATGACTGAAACTAAGTCAACCAGTAAGATAATTAAAAAACAAGACACAAAAAAGGTTTCCAGTTCCAGCCATCAGCACTATAGAAGGCAACCTCGGAAGGGTGAAAACCCCACTCGACTCATTCCTCCTCCCAACCAGCCTTCTGATTTTGGTCATTCAAATACTTGGATCTGTAAAAATGCTGCTTGCAGGGCTGTTCTGTCTATAGACGACACATTTTGTCGAAGATGCTCTTGCTGTATTTGTCACCTTTTTGATGATAACAAGGATCCTAGTCTTTGGTTGGTATGTACATCTGAATCTGCTCAAGGGGACTCCTGTGGATTGTCTTGCCATATTGAATGTGCCCTTCAACATGAAAAGGTGGGAGTTGTAGATCATGGGCAACTGATGCAACTAGATGGTGGCTATTGTTGTGCATCCTGTGGTAAAGTTACGGGGATACTTGGATGCTGGAAGAAACAGTTAAATATAGCAAAGGATGCGCGACGTGTAGATGTACTCTGTTACAGGATATATTTGAGCTACAGGCTCCTGGATGGAACCTCAAAATTCAAAGACTTGCATCAGACAGTACAAGAGGCGAAGGCTAAACTGGAAACAGAAGTTGGTCCTGTTAATGGTGTTTCTGCCAAGATGGCTCGAGGCATTGTCAGCAGACTCCCTATTGCCAGTGATATACAGAAACTATGCTCTCTTGCTATTGAGAAAGCTGATAGGTGGCTTGCCACTTTTCCCAGTGTAAATCCAGACTCCGCAGAGGGTTCATTTCCTGCTGCTTGCAAGTTTGTTTTTGAAGAGGTGACAATTTCCTCCGTCAAAATTATTTTAATTGAAAATGTATGTTCTGAGGATATTAAGGGATACAAACTCTGGTATTACAAGAGTCGGGAAGAATCACCTACTGAAGATCCTGTTTCCATGTTTCCCAAATCTCAGAGGAGGATTTTGATATCCAACCTCAAGCCTTGCACAGAATATACTTTTCGGATTGTATCTTACACTGATACAGGTGACTTTGGTCATTCTGAGGCTAAGTGTTTCACTAAGAGCATTGAGATAATAAAAAACAATCCCTCATTGTCTGTTGCCATGAATCATGAAAAAGACAAACTTCTAACTAAGGGCAATTCTTCGGGTTCCAAGGTGGGGCCCAATGCCACAATGGATAATTATGGATTCAAGGTTCGAGACCTTGGAAAAATTTTGCGTCTTGCTTGGGCTCAAGAACAAGGTTACATGGAAGAGTTTTGCAGTGCTAATATGAAAAATTGCTGTGGACAAAGTGAAATGGTGGATAAGGCTAGAATTCCAGCAGCACAGCTGCCTTCAGTGTCAACCGGCCTTGATTTAAATGTTGTTTCTGTTCCTGATTTAAATGAAGAACTAACACCTCCTTTTGAGTATTCTAGGGATGAAGATAATGGTTGCTCTTTGCTGCAAGCTGTTGAGGCAGATGATGATGCTGCATCGCATGATCTAGAGAAAAATGGTTTAGCAAGATCACATGGGAGTGGGGATTCCCAGACCTGGACCCATGGTCCAACAGGAGAAGTATCTGCTGTTGATTCTCGCATAGATATGTGCAGGAAAAGGATGGCAAGCACAAACGAAGAGACACATGATTGTGACAGCACTTTGATAAATGGTTCTCCTTTACGCATATCTGATGGTTCATTTTCCTTGGATGAGAACTTTGAGTATTGTGTTAAAGTAATTCGTTGGCTAGAATGTGAGGGTCACATCAAACAGGAATTTAGGTTGAAATTGCTAACATGGTTTAGTTTAAGGGCGACAGAGCAAGAACGCAGGGTGGTTAATACCTTCATTCAAACTCTTATCGATGATCCAAGTAGTTTGGCAGGCCAATTGGTAGACTCTTTTTCTGATATTATATCCAACAAGAAGCAAAGAAATGGATTCTGTAGTAAACCTGGGGCATCAAATTAAGGGTGATCCTGTTATACAAGTTTATCATTTGCATCAAGGTTTCCATTTATCATTTTGTCGGAAAAAATCACCCTGATTGTTTTTGCCTTCCTTTGTACAGGCATTTTTTTAAAATTATTCACCTTCCAAGGGATACATTTTTATTGCAGACAAGGTTTGTCCTGCTAAAAGGATTTGCTTTGATGATCGCAGAAACAGTAGCTCATTTTTCCCTGGAAGGAGGATCTATGGACATGAAGTTTCAGGATGTAGGAGGCATTATGCTATTTCTAAATTGATGCAATCATTTTTAGTAATGAATTTAGTTTCAGAAGAGTATTGAAGCTTTCTTCTCATAACCTTTATTTGAAGAAGTTACATGATTCAATTGTTTATTTTATTTTATATTTGCCATTCTATTGGCATCGTTGTTGTTCCCCGCACTGATGAGTAGGCAAATGAAAATGCTTGCTTTTAACCAGTTGTGGTAAGAGTTTGAACGGGTACGGTAAACCTACGAATTCAAAATGACCCCATTTAATTAAACTTAGTTTGAGTTGAATTCAATCCAACCTTTTCATGTACTGATTTGATAAAGGGTTTTTTGATTGCTGCACTCGGGAATCAAGCCTATTGATGTGACATCTTTATACAAGCAGAAGAAGCATTGTTTTAAGTACAAAA 3420 0.3892 MLFLSACQARLIQSQFLAIRNTFRREVPCQSSTICSYFSPVSAVQSLSSSVQSTPEKNGHSDCASKSAELLQFLKCGPKKELLRMCFDKDKENISSRSRMTETKSTSKIIKKQDTKKVSSSSHQHYRRQPRKGENPTRLIPPPNQPSDFGHSNTWICKNAACRAVLSIDDTFCRRCSCCICHLFDDNKDPSLWLVCTSESAQGDSCGLSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDARRVDVLCYRIYLSYRLLDGTSKFKDLHQTVQEAKAKLETEVGPVNGVSAKMARGIVSRLPIASDIQKLCSLAIEKADRWLATFPSVNPDSAEGSFPAACKFVFEEVTISSVKIILIENVCSEDIKGYKLWYYKSREESPTEDPVSMFPKSQRRILISNLKPCTEYTFRIVSYTDTGDFGHSEAKCFTKSIEIIKNNPSLSVAMNHEKDKLLTKGNSSGSKVGPNATMDNYGFKVRDLGKILRLAWAQEQGYMEEFCSANMKNCCGQSEMVDKARIPAAQLPSVSTGLDLNVVSVPDLNEELTPPFEYSRDEDNGCSLLQAVEADDDAASHDLEKNGLARSHGSGDSQTWTHGPTGEVSAVDSRIDMCRKRMASTNEETHDCDSTLINGSPLRISDGSFSLDENFEYCVKVIRWLECEGHIKQEFRLKLLTWFSLRATEQERRVVNTFIQTLIDDPSSLAGQLVDSFSDIISNKKQRNGFCSKPGASN 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00345 748 Pfam Fibronectin type III domain 381 440 IPR003961 GO:0005515
Pste3g00345 748 CDD PHD_VIN3_plant 177 241 - -
Pste3g00345 748 MobiDBLite consensus disorder prediction 97 134 - -
Pste3g00345 748 PANTHER VIN3-LIKE PROTEIN 2-RELATED 48 743 IPR044514 GO:0010048|GO:0040029
Pste3g00345 748 MobiDBLite consensus disorder prediction 596 617 - -
Pste3g00345 748 CDD FN3 384 448 IPR003961 GO:0005515
Pste3g00345 748 Gene3D Immunoglobulins 346 444 IPR013783 -
Pste3g00345 748 ProSiteProfiles Fibronectin type-III domain profile. 356 453 IPR003961 GO:0005515
Pste3g00345 748 Pfam PHD - plant homeodomain finger protein 157 275 IPR032881 -
Pste3g00345 748 MobiDBLite consensus disorder prediction 601 616 - -
Pste3g00345 748 MobiDBLite consensus disorder prediction 97 147 - -
Pste3g00345 748 SUPERFAMILY Fibronectin type III 383 439 IPR036116 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00345 Pste-Chr3 1743027 1751405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00345 153 739 PHD Gene Family AT3G24440 48.845 1.69e-179 525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g00345 3 1743027 1751405 Pste3g00345 3 1743027 1751405 ECH
Pste3g00345 3 1743027 1751405 Pste9g01530 9 15173471 15181985 PCT