Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00327 ATGATTCACACTTTCGCAGGTCCAAGTATAGTTGTCATCGTTGGCCGTTCGCTCCCTCCAGTCGCCTCGCTGCTTGCTCGCTGTCGTAATATGATGGGCAGGGTAAAACTAAAGATAAAAAGGTTGGAGAACACCAATGGCCGCCAAGCAACATATGCTAAAAGGAAGAATGGAATTATGAAAAAGGCTGCTGAATTGTCTATATTGTGTGATATAGATATTATACTTCTCATGTTTGCACCAAATGGAAAGCCTTCATTATGTAGAGGGAGACGCAGTAATTTAGAGGAGGTTATTGCGAAGTTTGCTCAACTAACTCCTCAAGAAAGGGCAAAAAGGAAATTGGAGACTCTTGAAGCATTGAAGAAAACATTTAAGAAGTTAGATCATGATGTAAATATACAAGAATTTCTGGGTACAAGAATGAGTGCAGAGCAACATCTCCAACCATTATCATGGATTACCAATGGAGACAACCAAAATATAGTTTTACCTGAGGACTCAAATATGTTTCTCCACAAAGATGTAGAGGGATCTACAAGTTCATCTTTTGGAAGTTATGCTAGTTATCTTGGCTCAAGTATGAAAAATGAGATGTCTAATTCAACACAAGAAAATGGGGTCCTAAGTGAGATGACTAGTACCGCCCCTATGAGACTACAATTGAATGGACAGTTTCCATACCTACCATATAATTTTAATTTACTGAACAATTTGAAGTTTCAATCAACTGCAGAGATCAACCCACATGAAAATCCTATAGATTATCATGTGAATGGAAGCTTTGAAGCACCTAGATCTAGTTATGACTCTAATCAACATGGTTGGGCTTCCACATCAGGGCCTTGTGGTGTTACTATGTTTGATGAGCAGTTATATACTCAGGCAAGTTTCACTAAAGAGAATTTTGGCTTCACATAG 921 0.3855 MIHTFAGPSIVVIVGRSLPPVASLLARCRNMMGRVKLKIKRLENTNGRQATYAKRKNGIMKKAAELSILCDIDIILLMFAPNGKPSLCRGRRSNLEEVIAKFAQLTPQERAKRKLETLEALKKTFKKLDHDVNIQEFLGTRMSAEQHLQPLSWITNGDNQNIVLPEDSNMFLHKDVEGSTSSSFGSYASYLGSSMKNEMSNSTQENGVLSEMTSTAPMRLQLNGQFPYLPYNFNLLNNLKFQSTAEINPHENPIDYHVNGSFEAPRSSYDSNQHGWASTSGPCGVTMFDEQLYTQASFTKENFGFT 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00327 306 SUPERFAMILY SRF-like 33 126 IPR036879 GO:0003677|GO:0046983
Pste3g00327 306 Gene3D - 45 128 IPR036879 GO:0003677|GO:0046983
Pste3g00327 306 ProSiteProfiles MADS-box domain profile. 32 84 IPR002100 GO:0003677|GO:0046983
Pste3g00327 306 FunFam Agamous-like MADS-box protein AGL30 45 127 - -
Pste3g00327 306 PRINTS MADS domain signature 54 69 IPR002100 GO:0003677|GO:0046983
Pste3g00327 306 PRINTS MADS domain signature 34 54 IPR002100 GO:0003677|GO:0046983
Pste3g00327 306 PRINTS MADS domain signature 69 90 IPR002100 GO:0003677|GO:0046983
Pste3g00327 306 SMART madsneu2 32 91 IPR002100 GO:0003677|GO:0046983
Pste3g00327 306 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 41 85 IPR002100 GO:0003677|GO:0046983
Pste3g00327 306 Coils Coil 25 45 - -
Pste3g00327 306 Coils Coil 108 128 - -
Pste3g00327 306 PANTHER SERUM RESPONSE FACTOR HOMOLOG 32 139 - -
Pste3g00327 306 CDD MADS 33 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00327 Pste-Chr3 1611732 1621454 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00327 139 295 Type I MADS-box Gene Family AT2G03060 35.165 2.32e-15 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pste3g00327 SRF-TF 1e-17 No_clan