Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00320 CTTGTGGTGTTGCTTTTTCCTCTTTCGCCGCTCAAACTCGAAAGCTCCATCGATCGAGGTTCGTCACTGTCGTCTTCAATCCTTCGATCTGTTCTTAGCCTTCGTCACGACAGACTCTCTCGGAAAATGCTCCCTCTACGTCCACAATCACAGGTTGGAGGACTACAAACATCGTTGTCTCTTGTTTCTTCGGACCCTCTCCAGTCTCCTGATGAACCTAGATCAAACTCTGACAATCTGCGTGAATCGCCTGCTGAAAGTGCAAGTTCTCAAGAAACTTGGCCCACAGCTGATGCAGGTCCAGCAAAGAAGATGGAGAATGGAAAAGCGGAGATCAATTGCCTTGAGCCAAAAGTAATTCACCGTGTTTCTAGTGCAGACAAAGTTACTCTTCAGGACATTGCAAGAGAAAGTGTTAGTACAATATGTGAAAAAATGCATCGTCTACCTGAGGAATATCTAGAAGAGCTGAAGAATGGACTTCGAGTTATCCTTGAGGGAGGGAATGGTTCGCAGCATAGAGATGAATTTTTTATTTTGCAGAAGCTTGTTCAGAGTAGAACTGATTTGACACCCAAGACACTGGTCAGAGCACATCGAGTGCAGCTTGAAATCCTTGTTGCAATAAATACTGGAATTCAGGGATTTTTACATCCTAGCATCAGCCTATCACAGACTTCCCTGATTGAGATCTTTGGCTATAAGAGATGCAGAAACATAGCATGCCAAAACCAGCTTCCAGCTGATGATTGTACCTGTGAAATATGCACTAACACTAACGGTTTCTGTAATCTTTGCATGTGTGTGATTTGCAACAAGTTTGACTTTGAGGTGAATACTTGCCGCTGGATTGGATGTGATCTGTGTTCTCATTGGACTCACACAGATTGTGCCATTCGTGAACGACTTATTTGCATGGGCCCTTCATCAAAGAGCGGGGCAGGACCAAGTGAAATGGTTTTCAGGTGTCAAGCATGCAATAGGACTTCAGAACTGTTGGGATGGGTTAAAGATGTCTTCCAGCACTGTGCACCATCATGGGACGGAGAGGCATTAATCAGGGAACTTGATTATGTTAGTAAGATCTTTCGGGAGAGTAAAGACCCCCGAGGTAGGAAGCTATTTTGGAAGTGTGATGATCTGACAGAAAATTTGAAAAGTAAAAAAATGGATTCAAAGGCTGCTTGCAGGGCAATATTGATGTTTTTCCAAGAGCTTGAGGTGGACTCTGCCAAAGGCCTGGAAAATGGAGAAAATGGAAGGTTGATTGCTCCGCAGGACGCATGCAATAGAATTGCTGAAGTGGTTCAGGAGGCTATAAGAAAGATGGAAATGGTAGCTGATGAGAAGATGAGGATGTTAAAGAAGGCTCGTTTGGCTCTTGAAGCTTGCGATTGTGAACTAGCTGACAAGTCCAGGGAAGTGTCCGAGCTCAAGATTGAGAGGCAGAAAAAGAAGATGCAGATAGAAGAGCTGGAGAAGATTGTGAGGCTAAAAAATGCAGAGGCTGATATGTTCCAATTGAAGGCTAATGAGGCTAAACGAGAGGCTGAGAGGCTTCAGAGGATTGCTCTTGCCAAGCATGATAAATCAGAGGAAGAATTTACCAGCAACTACTTGAAGCAACGATTAAGCGAAGCCGAAGCAGAGAAACAGTATCTTTACGAGAAGATCAAACTGCAGGAGAGTTCTCGTGCTTCACAGGGTGGTAGTGGTGGTGGTGGTGATCCCTCTCAAATGCTGATGTATTCCAAAATCCATGACCTGCTCTACAGTGTTCCTTCCAAAGCAGACAGTCAAGGTGATGTTGGTAAAGGCTTAAATATGTTTGAAGCTAGGCTTGTTCTAAGCATTATTAATGTT 1863 0.4402 LVVLLFPLSPLKLESSIDRGSSLSSSILRSVLSLRHDRLSRKMLPLRPQSQVGGLQTSLSLVSSDPLQSPDEPRSNSDNLRESPAESASSQETWPTADAGPAKKMENGKAEINCLEPKVIHRVSSADKVTLQDIARESVSTICEKMHRLPEEYLEELKNGLRVILEGGNGSQHRDEFFILQKLVQSRTDLTPKTLVRAHRVQLEILVAINTGIQGFLHPSISLSQTSLIEIFGYKRCRNIACQNQLPADDCTCEICTNTNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRERLICMGPSSKSGAGPSEMVFRCQACNRTSELLGWVKDVFQHCAPSWDGEALIRELDYVSKIFRESKDPRGRKLFWKCDDLTENLKSKKMDSKAACRAILMFFQELEVDSAKGLENGENGRLIAPQDACNRIAEVVQEAIRKMEMVADEKMRMLKKARLALEACDCELADKSREVSELKIERQKKKMQIEELEKIVRLKNAEADMFQLKANEAKREAERLQRIALAKHDKSEEEFTSNYLKQRLSEAEAEKQYLYEKIKLQESSRASQGGSGGGGDPSQMLMYSKIHDLLYSVPSKADSQGDVGKGLNMFEARLVLSIINV 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00320 621 Pfam PHD - plant homeodomain finger protein 237 360 IPR032881 -
Pste3g00320 621 Coils Coil 461 523 - -
Pste3g00320 621 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 63 592 IPR004082 -
Pste3g00320 621 SMART PHD_3 267 327 IPR001965 -
Pste3g00320 621 PIRSF UCP025218 39 598 - -
Pste3g00320 621 MobiDBLite consensus disorder prediction 60 106 - -
Pste3g00320 621 CDD PHD_OBE1_like 267 326 IPR047578 -
Pste3g00320 621 MobiDBLite consensus disorder prediction 60 96 - -
Pste3g00320 621 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 145 167 IPR004082 -
Pste3g00320 621 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 490 510 IPR004082 -
Pste3g00320 621 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 202 217 IPR004082 -
Pste3g00320 621 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 347 366 IPR004082 -
Pste3g00320 621 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 529 551 IPR004082 -
Pste3g00320 621 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 187 202 IPR004082 -
Pste3g00320 621 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 228 249 IPR004082 -
Pste3g00320 621 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 274 294 IPR004082 -
Pste3g00320 621 Pfam Coiled-coil region of Oberon 455 590 IPR032535 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00320 Pste-Chr3 1553286 1557681 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00320 237 339 PHD Gene Family AT5G57380 31.731 3.75e-09 57.8