Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00319 GGGTCATTGCCTCAGTCTGGGTACCTAACTACTTCAAAGTCCTCTCTTTCTCTCTCTTTCTCACATTCACACTCTCTTTTCTCTCATTGAACCAATGGTCTCGCTAGTGAAGAATCCGTGTAGGTATCTGTTAAAAGGCTTCAACATTTGAAACTTTTGAAACCAAAGCACTTTAGCTGTTTTTAACTTCTGCAAAATCTGTCTTCTGTTCTTCTCCCCCTTCACTATCTGTCCTGTCAAACTTTGCTCTCAATGTTACTCCTCCTCTTCATCATCGCATAAAATATTCTTTCTTTCTTCTTTTTCTTCTACTACTACTACTGTTGCTACCCTTTTTGCCACTTTGCAGCACTTTGTGTGAAAGTTTCATATTCACATACCCTTTTGTGAGAAAGAAAAGAAGAAAGATGAAGGCATGGCCAGCTAGTGTTGTGTACCCTTCACAAGAGAACACTAATAGTCTCACTAGATACCCTTCTTCTTCCTCCTACTCTTCTTCTCCTCCTTCAATGGGAATGGTCTATGCTGACATGGACTCTCTTTCTCTTTGCTCAAACTATGGTGTGGTGTCTTCTCATCAAGATTGCTATGTCTCCAACGGGGGCACAAACTGGGGGTTGCCCTTTATGAGGAGCAACTTTGAGGAACACCCCAACAGTGATGAGGGGGAAGAGGGAAAAGGTTCTGATAGCAGTGATGATGGGGGTGGTGAAGACAGTGACAAAGTTAACCATAATGCTAATAACTTTAACGATGAGAACCCTAATGAGAATTCTAACAGTGGTTCCGGGCATTCCAAGCTCTGTGCAAGAGGGCATTGGAGACCAGCAGAAGATTCCAAGCTCAAGGAGCTTGTGGCTCTTTATGGCCCTCAGAACTGGAACCTCATAGCTGAGAAGTTGGAAGGAAGATCAGGCAAGAGTTGTAGGCTGAGGTGGTTCAACCAGTTGGACCCAAGGATCAATAGGAGGGCATTCAGTGAAGAGGAGGAAGAGAGGCTAATGCAGGCACATAGGATTTATGGCAACAAATGGGCCATGATTGCAAGGCTTTTCCCTGGAAGAACAGATAATGCAGTGAAGAATCACTGGCATGTTATAATGGCCAGAAAGTACAGGGAACAGTCCAGTGCCTACAGGAGGAGGAGGCTTAGCCAGTCTGTTTACAGAAGAGTGGAGGAAAACACAGCAAGCAGCAATGTCTCTAGAGACACAACCACTGCAGGGACAGAACCACCACCAACACCCTATTGTCTCAATCTCCCAAATGGAGGCCTTTCCAACAACACTAACATGCCTAGTTTTAATTTCCCTTATGCTGCTGCACCCTTCCATGGAGTAGTGACTCCTGGTGGGGTTGAGTTTGGCTTAAATGACTCACCCCACATGACTGCTGCCAAAGAAGCAATCTCAACCACTAAGCTGGCCCCTCCTCACATTGCCTTGTATCCTCAACAAACACCACTTGATTTCTTTTCAGGTGTTACAAGCAATGACATGGTGGGAGAGTATTTTAGCCAGAACCATCATCATCACTACCACCACCAACACCAACCATCTGGCTTCTACCAACCTCATTACCCCCAATATCTGATGCTAATGCAGCACCAAAACAATCACAACTTTTACAGCTTCTCAAATTCCACAGGACAAATACTAAGCAGTGAAGCTTCACTATCATCAGTGGCAGCAGAACACAGAGATCAAGCCGTGAGCAGTGACACCCCAGATGCAATTCCACCTCCATTTATTGATTTCCTTGGAGTAGGAGCCACATGATCAAAGTTAGAACCAAAACAAAAAGCTGCAACCTTCCCCGGAACCTCCTCAATATAGGTGTGGTCCAACATTACTGAGAAACCATTCGAGGTAAACAGAAAGGATAGTTGCTTCAGTTTGGTGACTGTGATCCTTGCGTCACACTTCTGTAAGAAATCACACTTCACAGATCACACCTATATCTCTGTTGTGATTTCCTTTCTTTTATCACATGGGGACCCCCTTT 2004 0.4461 MKAWPASVVYPSQENTNSLTRYPSSSSYSSSPPSMGMVYADMDSLSLCSNYGVVSSHQDCYVSNGGTNWGLPFMRSNFEEHPNSDEGEEGKGSDSSDDGGGEDSDKVNHNANNFNDENPNENSNSGSGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLSQSVYRRVEENTASSNVSRDTTTAGTEPPPTPYCLNLPNGGLSNNTNMPSFNFPYAAAPFHGVVTPGGVEFGLNDSPHMTAAKEAISTTKLAPPHIALYPQQTPLDFFSGVTSNDMVGEYFSQNHHHHYHHQHQPSGFYQPHYPQYLMLMQHQNNHNFYSFSNSTGQILSSEASLSSVAAEHRDQAVSSDTPDAIPPPFIDFLGVGAT 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00319 456 CDD SANT 189 229 IPR001005 -
Pste3g00319 456 MobiDBLite consensus disorder prediction 106 130 - -
Pste3g00319 456 FunFam MYB transcription factor 135 186 - -
Pste3g00319 456 PANTHER MYB PROTEIN-RELATED 123 275 - -
Pste3g00319 456 MobiDBLite consensus disorder prediction 254 280 - -
Pste3g00319 456 Gene3D - 135 186 - -
Pste3g00319 456 FunFam MYB transcription factor 188 260 - -
Pste3g00319 456 MobiDBLite consensus disorder prediction 1 32 - -
Pste3g00319 456 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 135 181 IPR017930 -
Pste3g00319 456 MobiDBLite consensus disorder prediction 9 32 - -
Pste3g00319 456 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 182 236 IPR017930 -
Pste3g00319 456 SMART sant 186 234 IPR001005 -
Pste3g00319 456 SMART sant 134 183 IPR001005 -
Pste3g00319 456 MobiDBLite consensus disorder prediction 79 105 - -
Pste3g00319 456 ProSiteProfiles Myb-like domain profile. 135 181 IPR001005 -
Pste3g00319 456 Pfam Myb-like DNA-binding domain 135 181 IPR001005 -
Pste3g00319 456 Pfam Myb-like DNA-binding domain 187 230 IPR001005 -
Pste3g00319 456 MobiDBLite consensus disorder prediction 73 134 - -
Pste3g00319 456 SUPERFAMILY Homeodomain-like 135 228 IPR009057 -
Pste3g00319 456 MobiDBLite consensus disorder prediction 254 277 - -
Pste3g00319 456 CDD SANT 138 179 IPR001005 -
Pste3g00319 456 ProSiteProfiles Myb-like domain profile. 182 232 IPR001005 -
Pste3g00319 456 Gene3D - 188 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00319 Pste-Chr3 1551911 1554416 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00319 29 252 MYB Transcription Factor Family AT1G69560 52.869 6.20e-76 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste3g00319 Myb_DNA-binding 2.1e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g00319 3 1551911 1554416 Pste3g00319 3 1551911 1554416 ECH