Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00318 TGAGTATCTAATTTTGAGTAGAAAAATAAAATAAAGAGAGGAAGACGGAGCCCACTGGCACAGCACGCTGTCAAGTCTCGGCACACACTAACGATAATTGAACCATTTGCCTTGAGATTCTAAGCGAATAAATAGCATTTCACACTTAACAGAGCAAAGAAGAAGGAAAAAAGAAAAGGTGTGTATGACTATGATGAGAGACACAGGTGGGTTGGGAGGCAAGACAGCACGAGCCTGCGATAGCTGCATAAGCAGAAGAGCAAGGTGGTTTTGTGCAGCCGATGATGCTTTTCTCTGTCATGCCTGTGACTCTTTGGTTCATTCGGCGAACCAGTTAGCAAGCAGGCACGAAAGGGTTCGTCTTCAAAGTGCGTCCTCTAACGTAACCACCACAACACACGCATGGCACAGTGGATTCACACGCAAGGCCAGAACCCCGCGCCACCACAGCAAGCACTTTGCACTGCAGCAACGTCTCAAAGAAAAAGTTCTCTTCAACAACAACAACGTTCTTCCACTGGTGCCGGAGCTGGGAGGGGAAGAACAAGAACCTGAAACGAAGGAACAGATGGTGTTTCGCGTGCCCGTTTTTGTCCCTTTTCATGTCAGCACCCATGACTTGGATAGTTTTTCTGACATGGATTTCGCTGAGTTTTCTGCTGATGTTGAAAGCCTACTTGACAAAGAAGATCCTCGTATGGGAGGAGGAGAGGCTGCTCATGGTGCAATGGTGAAGGTTAAGGATGAAGACGAAATTGATGGTGATGTAGCGTGTTATCTGGAGTCCGTTTTTGACATCACAAATGATGATGCCTTTCGTTGGAATAACATTGAGTCTGTGCTGTCAGATGCACGTGAAGAGAAGACGCATACTGGTGTTGGTGTTGCTGAAGAAGGAGGAACAAAGAGAGACATATTTTTGAGACTAAACTATGATGAGGTTATTACTGCTTGGTCTAGCCAAGGTTCTTCTCCATGGACTACTTCTAACCCACCTATGTTCAACTCTGATTACGACTTCTGCTTGGGTTTGAGTGGTGCAGATGGGGAAGTAAGAACTTTAAGGGGACACCCAGATGGAGGAAGAGAAGCAAGAGTGTCGAGATATAAAGAGAAGAGAAGGACTCGTTTATTTGCAAAGAAGATAAGATATGAAGTAAGGAAGTTGAACGCAGAGAAGAGGCCTAGAATGAAAGGTCGTTTTGTGAAGAGGACATGCTTTGTTGGAGCCAATGCTGCTTTTCCAACTTACTACTGACATCAATCAGTTAAAGGATCCATCTTTGCTTTTCTGCAAATTTGGATTAATTCTTGGTTTGGCTATGTACCTATAGCCTGTATTATAATAATAGTAGTGGATTAGGCAAATTTTACTATAGTTGTTGCTTGGGAGCAGGTTTATTACTAATTAATGGCCGTCCTTCTCGGCAAGGTTTAGTAAGCCTTGTGGGTAATCAAATTTTGGAAGCCTTTTTATTGTTCCTGATTAGAAATTCAACTATATATTCAACGCTAAGGTTGTGCTTACTCCTTACCTAGCTGATTACAGTGTTTAATGTCATCAGGTTAGATGAGTGTTGGATTTTATATTTATCTGCTTGTGACTACAATTAATCCATCTCAATGATAAGGGCAGGATTGGTGGATACCTAGTCAAGC 1659 0.4298 MTMMRDTGGLGGKTARACDSCISRRARWFCAADDAFLCHACDSLVHSANQLASRHERVRLQSASSNVTTTTHAWHSGFTRKARTPRHHSKHFALQQRLKEKVLFNNNNVLPLVPELGGEEQEPETKEQMVFRVPVFVPFHVSTHDLDSFSDMDFAEFSADVESLLDKEDPRMGGGEAAHGAMVKVKDEDEIDGDVACYLESVFDITNDDAFRWNNIESVLSDAREEKTHTGVGVAEEGGTKRDIFLRLNYDEVITAWSSQGSSPWTTSNPPMFNSDYDFCLGLSGADGEVRTLRGHPDGGREARVSRYKEKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTCFVGANAAFPTYY 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00318 357 ProSiteProfiles CCT domain profile. 301 343 IPR010402 GO:0005515
Pste3g00318 357 CDD Bbox1_BBX-like 17 60 - -
Pste3g00318 357 ProSiteProfiles Zinc finger B-box type profile. 13 60 IPR000315 GO:0008270
Pste3g00318 357 Pfam B-box zinc finger 15 58 IPR000315 GO:0008270
Pste3g00318 357 Pfam CCT motif 301 343 IPR010402 GO:0005515
Pste3g00318 357 SMART bboxneu5 13 60 IPR000315 GO:0008270
Pste3g00318 357 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 10 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00318 Pste-Chr3 1551254 1553280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00318 3 344 C2C2-CO-like Transcription Factor Family AT1G68520 41.330 8.01e-79 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pste3g00318 zf-B_box 2.9e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g00318 3 1551254 1553280 Pste9g01503 9 14770766 14773174 PCT