Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00299 CACCAAAAGGTTGATTCCAAGTCAAAGAATGATAGTGGGGAAGAGTCTACGCAGACAAAATCTTTTAAGTATAAAAAGTGGAGGTTTCTCAGATTTGAGGAAGGGAAAAGAGGGAGGAAGGTTGGTATTTGGAAGGAGGAGAGGAGTCATAGTTTTGATGGAAGTGAAATGGCCTCAACAAGGAGGTCGGAAGATTTTCCTCAACTGAGCTCGCCTTTACCCTGTTATCCAACCCAGCAAGTGATGGTAACACATCCCATTAGTGGTGAAGGACCCCCAGTTTCTTTGTACGCAATGGAAGAAAACTTACCTCCTGGGTTCAGGTTCCATCCCACAGATGAAGAGCTCATTACATATTATTTATTAAGGAAAGTATCTGACACTGCCTTCACTTCTAAAGCTGTAGCAGTTGTTGATCTCAATAAATCTGAACCTTGGGACCTCCCAGGTAAGGGTTGTATGGGAGAGAAGGAATGGTATTTCTTTAGCTTGAAAGATCGGAAATATCCAACTGGGCTTCGAACAAACCGTGCAACAGAGTCGGGGTATTGGAAAACCACCGGAAAAGATAAAGAAATATTTGGTGGCGGAGTTTTGATAGGGATGAAGAAAACCTTAGTGTTTTATATGGGCAGAGCTCCGAGGGGTGAGAAAAGTAACTGGGTCATGCACGAATATAGGCTTCAACCCTATACATCTTCAAAGGAAGAATGGGTGATTTGCAGAGTGTTCGAAAAGAGCTCGGCACCCAAAAAGGCACAGCAGACATCATCCTCCCAACCATCTCAAGAGTCCCCTAACTCCATGGACATGGTCAACGAATTTGGTGATGTTGACATACCAAATCTAAATAATACCATTGCTGGACAAACTTACAACGTTAATTCAAACTTGAACTTGACCATGAATTTGGCTTCTGCTTCTGTCAATTCATTGCTTCTTAAGGCCTTACACCTTAGGAATACTTATCAACAAACTGAAGCTGCAGCTACTAATCACTTTCCAACTCATGCTCCTCAAGGATTTTCTCCCAATACCACCCCAAATCTCACTGCTGCTTCTTCCAAAGCTTTACAATCTTATTGTGTGTCCCAGCAGGAGCAACCATTCAATATGGACTCCATTTGG 1128 0.4273 HQKVDSKSKNDSGEESTQTKSFKYKKWRFLRFEEGKRGRKVGIWKEERSHSFDGSEMASTRRSEDFPQLSSPLPCYPTQQVMVTHPISGEGPPVSLYAMEENLPPGFRFHPTDEELITYYLLRKVSDTAFTSKAVAVVDLNKSEPWDLPGKGCMGEKEWYFFSLKDRKYPTGLRTNRATESGYWKTTGKDKEIFGGGVLIGMKKTLVFYMGRAPRGEKSNWVMHEYRLQPYTSSKEEWVICRVFEKSSAPKKAQQTSSSQPSQESPNSMDMVNEFGDVDIPNLNNTIAGQTYNVNSNLNLTMNLASASVNSLLLKALHLRNTYQQTEAAATNHFPTHAPQGFSPNTTPNLTAASSKALQSYCVSQQEQPFNMDSIW 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00299 376 ProSiteProfiles NAC domain profile. 103 246 IPR003441 GO:0003677|GO:0006355
Pste3g00299 376 MobiDBLite consensus disorder prediction 250 271 - -
Pste3g00299 376 MobiDBLite consensus disorder prediction 1 20 - -
Pste3g00299 376 MobiDBLite consensus disorder prediction 250 270 - -
Pste3g00299 376 SUPERFAMILY NAC domain 96 246 IPR036093 GO:0003677|GO:0006355
Pste3g00299 376 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 99 324 - -
Pste3g00299 376 Gene3D NAC domain 112 250 IPR036093 GO:0003677|GO:0006355
Pste3g00299 376 FunFam NAC domain-containing protein 100-like 112 250 - -
Pste3g00299 376 Pfam No apical meristem (NAM) protein 104 228 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00299 Pste-Chr3 1463563 1470592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00299 99 376 NAC Transcription Factor Family AT3G18400 55.000 2.10e-106 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste3g00299 NAM 5.1e-39 No_clan