Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00290 AACTAAACTATAGTCTATAGCTGCCACACATAGCTAAAAGCATCAAAAGTATATTTATATATATGTTTCAGCAACACTGCCAAAAAAAGAGAAAATGGATCTGCAAAATGTGCAAACTCAAAGCATGCGTTTGGTTCTGTCCACTGATGCCAAGCCTAGGCTGAAATGGACTCCTGAGCTTCACCAGCGGTTCACTGAGGCTATTAATCAACTTGGAGGTGCAGAAAAGGCAACTCCAAAGAGTCTTATGAGAGTGATGGGGATTCCAGGGCTCACTTTGTACCACCTCAAGAGCCATTTACAGAAATATAGGCTTGGGAAAATCCAACCACTAGAAACCTGCTCTGACAACAAGCACCAAGGTTACAGTGAAATCCAGAACATTGATGCTCATTGCAGCAAGGAAATCGGCACTGGGACCCAGAATCAGATGACTGAAAGCTTGAAGATTGCTGAGGCTCTCCAAATGCAAATGGAAGTACAAAGAAAACTCTATGAACAAATTGAGGTACAAAGACATTTGCAGCTTCGAATTGAAGCTCAAGGGAAGTATTTACAATCAGTACTAACAAAGGCACAAGAAACACTTGCAAGATACAGTTCTTCCACAACAAACATAGAACTTGCAAAAGCTGAACTTTCTCAGTTAGTGTCAATAATCAACAATGCATGTCCAAGCTCTCCCATTTCAGAACTGACAGAAACAAGAGGGCTCAGTTTGAACTGTGGAGAGAGGAAACAAGACAGAGGAACCATGTGTTCATTTGAAAGCTCTTTGACATCTTCTGAAAGTTCGGGGAGAACAGAAGAAAAACAAGCCATGTATGAAGCAGATAACCCTCAAAAGTTCACTAGTATTTCAGTTGAATTGCCTCTAATGTCCATTCATCCTGAAGATAAAGCATTCAAGGGAGATAATAGTGAGGGAGCAAGTGGGAGAAAGAGAAGTGCAGAAGCTGATTCTGATGGTATCTGTGTTGATCAACCTAGTGGAAAAAGGTGTGGCAACAATTTGAGGAAATCTGAAGTGTCAGAAATGCTTGACTTGAACAGCCAATATCAGAGAGACACTGACTCAAGTGTGAAAGAAATAGATTTAAATTTCAGTTCAAGCTTTTAGGGACAATAAAGATCTGTCTAATTATATTAAACATATGCAACAACAACATCATTCTCAGAAGAAAATATGTTTATAAACTATGTATATATTTTTATAATGAAAAGGGGAGAAAAAAAAGGTATAATACACATGTGGCA 1257 0.389 MDLQNVQTQSMRLVLSTDAKPRLKWTPELHQRFTEAINQLGGAEKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKIQPLETCSDNKHQGYSEIQNIDAHCSKEIGTGTQNQMTESLKIAEALQMQMEVQRKLYEQIEVQRHLQLRIEAQGKYLQSVLTKAQETLARYSSSTTNIELAKAELSQLVSIINNACPSSPISELTETRGLSLNCGERKQDRGTMCSFESSLTSSESSGRTEEKQAMYEADNPQKFTSISVELPLMSIHPEDKAFKGDNSEGASGRKRSAEADSDGICVDQPSGKRCGNNLRKSEVSEMLDLNSQYQRDTDSSVKEIDLNFSSSF 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00290 341 MobiDBLite consensus disorder prediction 267 307 - -
Pste3g00290 341 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 271 IPR044848 GO:0003700
Pste3g00290 341 MobiDBLite consensus disorder prediction 267 290 - -
Pste3g00290 341 FunFam Myb family transcription factor 19 77 - -
Pste3g00290 341 Pfam MYB-CC type transfactor, LHEQLE motif 118 164 IPR025756 -
Pste3g00290 341 Gene3D - 19 78 - -
Pste3g00290 341 Coils Coil 120 140 - -
Pste3g00290 341 MobiDBLite consensus disorder prediction 220 249 - -
Pste3g00290 341 MobiDBLite consensus disorder prediction 221 237 - -
Pste3g00290 341 NCBIfam myb-like DNA-binding domain, SHAQKYF class 20 75 IPR006447 GO:0003677
Pste3g00290 341 Pfam Myb-like DNA-binding domain 22 73 IPR001005 -
Pste3g00290 341 SUPERFAMILY Homeodomain-like 19 74 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00290 Pste-Chr3 1378390 1380204 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00290 11 302 G2-like Transcription Factor Family AT1G69580 49.505 5.55e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pste3g00290 Myb_DNA-binding 1.2e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g00290 3 1378390 1380204 Pste3g00290 3 1378390 1380204 ECH