Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00288 CAAAAACTCTTTTTTTAAAAAAATCACATGCCTGAATTCACTACAGATTTGCAAAGCTTTAGGCCCTCGTTTCCTTTCTTAGATATCGATAACACGGAAATGCAGAACTTGATGCCATCTGACAGCTTCTTGGAAGAAAATTTTCCAGGTCTTTTTCAATATGTCGATCATAATGCAATTCCAGATTTAGCTCCTATTAGTTCGGCTAAAAATGAATTCCATGAAGATAAAAAGAGGAAAACAACTGATCTGTGTGAGCTCAGTTCTGCTAATTCAACTCCTGCTGTTTCTGAGAATGGAAGCAAGACAAGAAATAGTTCTGGACGAGGCAAGAGAGCAAAAAGGAACATAATAGTAGACAAGAAACCAAATGAAGTAGTTCATGTTAGAGCCAAACGAGGCCAAGCTACTGATAGTCACAGTTTAGCAGAAAGAGTTAGAAGAGGGAAAATCAATGAAAAACTTAGGTGCTTGCAGAACATTGTCCCAGGATGTTGCAAGACCATGGGTATGGCAATAATGTTGGATGAGATCATAAACTATGTCCAGTCCTTGCAGCATCAAGTGGAGTTCCTCTCTATGAAGCTTACTGCAGCTAGTACCTATTATGACTTCAATTCAGAGTCAGATGCTTTAGAAACAATGCAGAGGACAAAGGCAAGGGCATCCGAGGCGGAAGAGTTGGGCAAGTATGTGAGAGAAGGAGTATCTAGCTTTGAACCAACATGGCCGTGGCCCCTGTGACTTGGCTTTTGGATCTCTTAACTCCAACCACACAATTCAACAGCATTCCCTTCTTACTTTCTACAATTTTAAAGGATCACTTTCTTTTCACTCCTTACTCCTTACTATAAAAACCACAGGTAGACACTCTCATTTGTACAAACACCCGTCTTGAAATGGAAGTCATTCCAAGCCTGCGTTTCATTTTCTTTTTGTGGTTTCACTTGTTTTATGGATCGAAAATTACTTTCCTAGATTACTTGTTAAAATGGAAGACGCTATCAATTTCTATCATAACCAATTAATAAACTTTGCCGTATGTATACAAATATTTATGTTACCAGAAACAAAA 1075 0.3842 MPEFTTDLQSFRPSFPFLDIDNTEMQNLMPSDSFLEENFPGLFQYVDHNAIPDLAPISSAKNEFHEDKKRKTTDLCELSSANSTPAVSENGSKTRNSSGRGKRAKRNIIVDKKPNEVVHVRAKRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCCKTMGMAIMLDEIINYVQSLQHQVEFLSMKLTAASTYYDFNSESDALETMQRTKARASEAEELGKYVREGVSSFEPTWPWPL 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00288 238 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 57 204 IPR024097 GO:0006355
Pste3g00288 238 Gene3D - 123 195 IPR036638 GO:0046983
Pste3g00288 238 MobiDBLite consensus disorder prediction 62 107 - -
Pste3g00288 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 194 IPR036638 GO:0046983
Pste3g00288 238 FunFam transcription factor BEE 3-like 123 194 - -
Pste3g00288 238 MobiDBLite consensus disorder prediction 76 97 - -
Pste3g00288 238 CDD bHLH_AtBPE_like 116 201 - -
Pste3g00288 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 126 176 IPR011598 GO:0046983
Pste3g00288 238 Pfam Helix-loop-helix DNA-binding domain 130 177 IPR011598 GO:0046983
Pste3g00288 238 SMART finulus 132 182 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00288 Pste-Chr3 1375323 1377265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00288 48 238 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 54.299 6.68e-63 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste3g00288 HLH 5.7e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g00288 3 1375323 1377265 Pste3g00288 3 1375323 1377265 ECH