Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00277 GTTTTTTATTGTTAGTTAGAAATTTGAAAATATGAAGAAATCCATGGCGTTTGTTGCTACAGTAATTTCAACAAGGTTCCGTGTTCCTCCTCCTCAAACTCAATGCCGATTCTACTCTTCTCCGCCATCTCCTTCCTCCAACAAACTATTTGTGGGAGGTTTGTCTTGGTCAGTGGACGAGAAATCCCTCAAAGACGCTTTCTCTTCTTTCGGAGACATCACTGAAGTGAGGATAGTATATGATAAAGACAGTGGCAGGTCTAGAGGCTTTGGATTTGTCATATTTTCAAATGAATATGATGCCAAATGTGCAAAGGATGCAATGGATGGAAAGGCACTGTTAGGTAGACCATTGAGGATAAATTTCGCTCTTGAGAAGGCCCGTGGTGTACCTGTTGTAGTTCCTCGACTATCAGATGTTGGACATTTGAACAGGCATAGGCACTAAATTTAATTTACCTTCCGAAGGGAACATATTAATTGTTAGCTGTTGACTAGAAAATTTGAATTGATTATCATGATACGCAAAGTCAGCAGAAAAGGAAATTTATAAGCAACTAAAAAT 565 0.3876 MKKSMAFVATVISTRFRVPPPQTQCRFYSSPPSPSSNKLFVGGLSWSVDEKSLKDAFSSFGDITEVRIVYDKDSGRSRGFGFVIFSNEYDAKCAKDAMDGKALLGRPLRINFALEKARGVPVVVPRLSDVGHLNRHRH 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00277 138 SUPERFAMILY RNA-binding domain, RBD 27 119 IPR035979 GO:0003676
Pste3g00277 138 CDD RRM2_NsCP33_like 38 113 - -
Pste3g00277 138 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 115 IPR000504 GO:0003723
Pste3g00277 138 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 31 118 - -
Pste3g00277 138 Gene3D - 15 119 IPR012677 -
Pste3g00277 138 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 109 IPR000504 GO:0003723
Pste3g00277 138 SMART rrm1_1 38 111 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00277 Pste-Chr3 1292520 1296640 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00277 35 116 C2H2 Transcription Factor Family AT2G19380 38.095 4.28e-13 63.2