Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00272 GTTCTTTCTTATCGACGTAGAAGCCAAACTCCCAAACCAAACCAATCTCCTCCTCCTTCTCCGCTTCAAAACAAAAAAGATTTAGTGAGAGAAACTCACTCTCTCTCTCTCTCTCTCTTCAACCATCCATGCCACTGGACAGAGATTCGCTGATTTTGTAGAAAGAAACGCAGAGATGATAAAGTGCTGAGCCACTTTTGAAGCAGTTTCCCCGGAAACAAAAAAGAAAGTTGAGACGGAGAACGCTCATGGCCTCGCCGTTGGACGGAGGAGGAGTGGCGGTGCTCCCTAATTCCGTCAACAAGGTGGACTCCGCCTCGGCTCTCAATGGCAGCTTGAAGAGCTCCAAACCGGACTCACCAATTTTGATTTTCTTGTTCTTTCACAAAGCAATTCGGAATGAGCTTGACGCGCTGCACCGGATGGCCGTAGCGTTCGCCACCGGCAACCACTCCGATATTAAGCCGCTCTCCGACCGCTACCATTTCCTCAGCTCCATGTACAGGCACCACTCCAATGCTGAGGACGAGGTGATTTTTCCTGCTCTGGATATTCGTGTAAAAAATGTAGCACAGACATACTCTCTTGAGCACAAGGGTGAAAGCAACCTTTTCTATTATCTATTTGAGCTTTTAAATTCTTCCAGCAATAATGATGAGAGTTTTCCGAGAGAGTTAGCATCCTGCACAGGAGCTTTGCAGACATCAGTTAGTCAACACATGGCGAAGGAAGAGGAGCAGTACTTTGTGCTCTTGTGGAGTACTTTTAATGGCACCATATGGGCTTTGTCTAGTGATTCAACCAAGAATAGAGTTATGGTGAAGAGGTTCAATAAGAATGGAGTTAGCCATGTGCTGGAGGTTATACTTGGATCATTACCAGGAATTGCACTGATTACTGTTTTGGAGGTTAGCAAACAAACCTATATTGAGATAGAAAAAAGTAAGAAACAAATCAAAATGCTGCCCCTCCAATTTGTCATGATTCTCATAGTGCTCATTCTAATGAGAGTATTTCCTCTGCTTATTGAGAAGTTTTCTCTTGAGGAACAAGCATCCTTAGTTTGGCAGTTTCTTTGCAGTATTCCTGTGAAAATGATGGCCGAATTTCTACCTTGGCTTTCAGCATCTATATCACCTGATGAATCTCAGGATTTACGAAATTGCTTAAATAAGATAGTGCCACAGGAAAAGCTTCTTCAGAAGGTTGTTTTCACCTGGATGGAAGGAAGAAGTAGTGCTAATACAGTTGAAACTTGTTTAGATCATTCTCAAGTTAAATGTAGTTCTAGGTCATTAACCCATCAAGTTGAGAAAGTAAACTGTGCTTGTGAATCCACAACAACCGGAAAAAGGAAATATTCTGGATCTTTGACAGACATTTCTGATACCACTGGAACACATCCTATAGATGAAATATTGCTCTGGCATAATGCAATAAAGAAAGAGTTACGTGAGATAGCAGCGGAGGCCAGAAAGATACAACACTCTGGAGATTTTACTAATATTTCTGCTTTTAACGAAAGATTTCAATTCATAGCTGAAGTTTGCATATTTCACAGTATTGCTGAGGACAAGGTTATTTTTCCTGCTGTAGATGGAGAATTTTCTTTCTTCCAGGAGCATGCTGAAGAAGAAAGTCAATTTAATGACTTCCGGCGATTGATTGAAACTATTCAAAGTGAAGGAGCTTCATCTAATTCTGATGTTGAGTTTTATTCCAAGTTATGCACACATGCTGATCATATAATGGAAACCATACAGAGGCATTTCCATAATGAAGAAGTTCAGGTTCTTCCACTCGCAAGAAAGCACTTTAGCTTTAGAAGGCAATGTGAACTTTTGTATCAAAGCTTATGCATGATGCCTCTGAAGTTGATTGAGCGTGTCCTGCCATGGTTGGTAGGATCTTTATCTGAAGATGAAGCAAAGATGTTTCAGAGAAATATGCAGTTGGCAGCTCCAGCAATAGATTCTGCTCTGGTCACACTCTTCTGTGGATGGGCTTGCAAGGCTCGTAATGAAGGTCTGTGTTTGTCTTCAGGTGCATCAGGTTGCTGTCCTACTCAAAGACTTTCTGATATTGAAGAAAATATTAGTTGGCCATCCTGTGCTTGTGCATCTGCATTTTCTAATAGACATTGCTCAGTACTAGCTGAATCAGGTGGGAACAAAAGACCAGTTAAGCGAAACATATTGGAGTCACACAAAAATGAAGATGTACCTGAAGCTTCAGAGACTGAAAGTATTCAGAACCAATGCTGTAGTGAGTGGTCTTGTTGTGTGCCTGGTTTAGGTGTAAGTAGTAACAAAGGGCTGAGTTCTCTTTCTACCGCCAAGTCCTTCCGGTCCTTGTCTTTCAGCTCTTCTGCCCCATCTCTAAATTCCAGTCTTTTTGTATGGGAAACAGAGAGCAGCTCATGCAATGTTGGAGCTACACAAAGACCAATTGATACCATATTTAAATTCCATAAAGCTATACGCAAAGACTTGGAGTATCTAGATGTTGAATCTGGAAAGCTGAGTGATGGTGATGAGACAATTCTTCAGCAATTTAATGGGAGATTTCGTCTTTTGTGGGGTTTGTATAGAGCTCATAGTAATGCTGAAGATGATATAGTTTTTCCAGCTTTAGAATCCAAAGAGGCACTTCATAATGTGAGTCATTCGTACATGCTGGACCATAAGCAGGAAGAACAATTGTTTGAAGATATTTCCTGTGTTCTTTCAGAGTTTTCTGTCCTTCATGAAGCCTTACAGAGGACCCACATGACAGAGGATTTAAGTGAAAGTAATTTTGTAACCTCTGATGCCAATACTAGTGATAATATAAAAAAATATAATGAACTTGCTACTAAGCTTCAGGGGATGTGCAAATCTATAAGAGTGACCCTTGATCAGCATCTTTTCAGAGAAGAATGTGAACTGTGGCCATTGTTTGGGAGACATTTCACTGTGGAAGAACAAGACAAGATAGTGGGTCGAATAATTGGAACAACAGGTGCTGAAGTTCTCCAATCATTGTTGCCATGGGTAACGTCTGCACTTACTCAGGATGAACAGAACAAAATGATGGATACATGGAAGAAGGCCACTAAGAACACGATGTTCAATGAGTGGCTTAGTGAATGCTGGAAAGAGAGTCCGGTGTCTATAGCACACACAGAAACATCAGATCATAGCACTGCTCGAAGAAGTGCTGAATATCAAGAAAGCTTGCACCACAATGATCAGATGTTCAAGCCAGGTTGGAAAGACATATTTCGGATGAATCAGAATGAACTTGAGTCAGAGATCCGGAAAGTATATCGAGACTCAACTCTTGATCCAAGGCGAAAGGCATATCTTGTGCAGAATCTACTGACAAGTCGATGGATAGCTGCTCAGCAGAAATCACCTAAAGCTCTATCTGAAGGATCATCTAACAGTGTAGAAATAGAAGGACTCTCACCCTCATTTCGGGATCCAGAGAAGCATGTATTTGGGTGTGAGCACTATAAGAGAAATTGCAAGCTTCGGGCTGCATGTTGTGGCAAGTTATATACTTGCAGATTTTGTCATGACAATGTTAGCGATCACTCTATAGATAGAAAAGCAACATCGGAAATGATGTGTATGCGCTGCCTGAGTATACAGCCAATAGGGACCGCATGCATGACTCCTTCATGTAATGGATTTTCAATGGCGAAATACTATTGCAATATATGCAGATTTTTTGATGATGAAAGGAATGTATATCATTGCCCATTTTGCAATTTATGCCGTGTTGGACGAGGGCTTGGGATCGATTATTTTCATTGTATGAAATGCAATTGTTGCCTTGGGATTAAATCAGCATCTCATAAGTGCCTGGAGAAAGGTTTGGAAATGAACTGCCCAATCTGTTGTGATGATTTGTTCACTTCAAGTGCTACGGTCAGAGCCCTACCTTGCGGCCATTATATGCATTCTGCTTGCTTCCAGGCATACACGTGTAGTCACTACACTTGTCCAATCTGCAGCAAGTCACTTGGAGATATGGCGGTTTACTTTGGTATGCTTGATGCCTTATTGGGTGCTGAGGAGCTTCCTGAAGAGTATAAGGACCGCTGTCAGGACGTACTCTGCCATGACTGTGATCGGAAGGGCACTGCGCGCTTCCACTGGTTGTATCACAAATGTGGACTTTGTGGCTCTTACAATACCCGGGTTATCAAGTGTGAGACGTCAAACTCCAGTTGCTCTTAGTGTGCTTCTTTTGACGGGAGGTAGACAGAGTTTGTAAATACTTGTATAGCTAATTAGGAATCCAATTTTTGTGCCATGACTAGGAGTCCCCCTATCGTTTCCTCTTATACATAATGCAAGTGAATCACAAAGTTAGGGGTCTCTTACCTCTTGTTCTCAACATATGCTCCTAATCCGTTTTATAGCAATGTACAGATCAACTTTCTACTTATGCAACTTATATTGCAGCTCGCA 4460 0.4159 MASPLDGGGVAVLPNSVNKVDSASALNGSLKSSKPDSPILIFLFFHKAIRNELDALHRMAVAFATGNHSDIKPLSDRYHFLSSMYRHHSNAEDEVIFPALDIRVKNVAQTYSLEHKGESNLFYYLFELLNSSSNNDESFPRELASCTGALQTSVSQHMAKEEEQYFVLLWSTFNGTIWALSSDSTKNRVMVKRFNKNGVSHVLEVILGSLPGIALITVLEVSKQTYIEIEKSKKQIKMLPLQFVMILIVLILMRVFPLLIEKFSLEEQASLVWQFLCSIPVKMMAEFLPWLSASISPDESQDLRNCLNKIVPQEKLLQKVVFTWMEGRSSANTVETCLDHSQVKCSSRSLTHQVEKVNCACESTTTGKRKYSGSLTDISDTTGTHPIDEILLWHNAIKKELREIAAEARKIQHSGDFTNISAFNERFQFIAEVCIFHSIAEDKVIFPAVDGEFSFFQEHAEEESQFNDFRRLIETIQSEGASSNSDVEFYSKLCTHADHIMETIQRHFHNEEVQVLPLARKHFSFRRQCELLYQSLCMMPLKLIERVLPWLVGSLSEDEAKMFQRNMQLAAPAIDSALVTLFCGWACKARNEGLCLSSGASGCCPTQRLSDIEENISWPSCACASAFSNRHCSVLAESGGNKRPVKRNILESHKNEDVPEASETESIQNQCCSEWSCCVPGLGVSSNKGLSSLSTAKSFRSLSFSSSAPSLNSSLFVWETESSSCNVGATQRPIDTIFKFHKAIRKDLEYLDVESGKLSDGDETILQQFNGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYMLDHKQEEQLFEDISCVLSEFSVLHEALQRTHMTEDLSESNFVTSDANTSDNIKKYNELATKLQGMCKSIRVTLDQHLFREECELWPLFGRHFTVEEQDKIVGRIIGTTGAEVLQSLLPWVTSALTQDEQNKMMDTWKKATKNTMFNEWLSECWKESPVSIAHTETSDHSTARRSAEYQESLHHNDQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLLTSRWIAAQQKSPKALSEGSSNSVEIEGLSPSFRDPEKHVFGCEHYKRNCKLRAACCGKLYTCRFCHDNVSDHSIDRKATSEMMCMRCLSIQPIGTACMTPSCNGFSMAKYYCNICRFFDDERNVYHCPFCNLCRVGRGLGIDYFHCMKCNCCLGIKSASHKCLEKGLEMNCPICCDDLFTSSATVRALPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLGAEELPEEYKDRCQDVLCHDCDRKGTARFHWLYHKCGLCGSYNTRVIKCETSNSSCS 1325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00272 1325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1205 1253 IPR013083 -
Pste3g00272 1325 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 776 1322 - -
Pste3g00272 1325 Pfam Zinc-ribbon 1256 1313 IPR039512 -
Pste3g00272 1325 Gene3D nmb1532 protein domain like 386 535 - -
Pste3g00272 1325 Gene3D nmb1532 protein domain like 36 178 - -
Pste3g00272 1325 Gene3D - 1280 1321 - -
Pste3g00272 1325 Pfam CHY zinc finger 1080 1155 IPR008913 GO:0008270
Pste3g00272 1325 Gene3D nmb1532 protein domain like 729 971 - -
Pste3g00272 1325 ProSiteProfiles Zinc finger CTCHY-type profile. 1145 1208 IPR017921 -
Pste3g00272 1325 CDD RING-H2_Pirh2-like 1208 1251 - -
Pste3g00272 1325 CDD Hr-like 41 166 - -
Pste3g00272 1325 ProSiteProfiles Zinc finger RING-type profile. 1209 1251 IPR001841 -
Pste3g00272 1325 CDD Hr-like 388 517 - -
Pste3g00272 1325 Pfam Hemerythrin HHE cation binding domain 43 168 IPR012312 -
Pste3g00272 1325 Pfam Hemerythrin HHE cation binding domain 385 519 IPR012312 -
Pste3g00272 1325 Pfam Hemerythrin HHE cation binding domain 733 896 IPR012312 -
Pste3g00272 1325 ProSiteProfiles Zinc finger CHY-type profile. 1073 1142 IPR008913 GO:0008270
Pste3g00272 1325 Pfam Ring finger domain 1208 1250 IPR001841 -
Pste3g00272 1325 SUPERFAMILY RING/U-box 1207 1254 - -
Pste3g00272 1325 FunFam Zinc finger protein-related isoform 1 1204 1253 - -
Pste3g00272 1325 SUPERFAMILY CHY zinc finger-like 1073 1136 IPR037274 GO:0008270
Pste3g00272 1325 CDD Hr-like 735 895 - -
Pste3g00272 1325 SMART ring_2 1209 1250 IPR001841 -
Pste3g00272 1325 SUPERFAMILY Zinc hairpin stack 1146 1202 IPR037275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00272 Pste-Chr3 1240395 1251135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00272 733 947 C2H2 Transcription Factor Family AT3G18290 28.372 1.28e-19 94.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g00272 3 1240395 1251135 Pste3g00272 3 1240395 1251135 ECH
Pste3g00272 3 1240395 1251135 Pste9g01484 9 14545475 14555060 PCT