Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00247 GCGTTTCTTTGTGCCTTGTTTCTCTTGTTCACTACTAGGACTACCTCCGGAAGCCACAACATATCATCCTCAGAAACAACTTGTCCTGCTAATAAGCGATGCAAAAATGGGCCTAACATCAGTTACCCTTTTTGGTTTTCCCAAGGTTCCCCTCCTGACCAATATTGCGGTTACCCAGAACTTGGTCTTATTTGTTATGATAATGGTAACACCATTTTTGCTCCACCCCCGGGATTAAACTATTACGTAAAAGACATTGACTATGCAAGCCATAGTCTTAAGCTCGTTGATTTTGACACCGCAAACAAAACTTGTCCAAGGGCCCTTCACAAATTTCCCTTCGGCAACTTACCTCTCTCTCACTCCCCCCTCAACTTAAATCTTAGCTTTTACTACAACTGCAGTCAATACCCTTCTGGTGTCCCTTCCATCAAGTGTTTAAGTTCTGGGCTAAACGAGTCTTTTGTGTTTCTGATGGGGAACGAGACCAAAGGTTTTGATTGGTTGAGGAACTGCCAGGAAAACGTTGTCGTGACAGTGATGAAGGATCAGATTACAGCTGATGGTGGCTTGGTCAACCAGTTTGCTGGGGCCATGGATGAAGGCTTTGTGCTTGAATGGCAGACAACTGCTAGTTGTGCTCAGTGCGAAGCCAGTAATGGTGTTTGTGGCTACAGTACCACCAAAAAGGAGACCGTGTGCTTTTGCAATGATGGCAGTACAAGAAGCAATAAATGTCAAGGGGAAGAGGGAAGCAGCACTGGTTTGTCAAGATTAATTATAGGTTTAATAATAGCTGGAGGAATTGGTGCCCTGCTAATATGCATTCTACTTTACAGTTTTAGGCGAAAATTAAAGCCAATTGTGTCAGAAATTCGGCAGGCCAAAGAGATTGATAAAGACATTGAGGCCTTCATAAGAAATAATGGACCACTTCCAATAAAAAGATACTCATATTCAGAGATCAAGAAAATGACCAATTGTTTTGGATCCAAACTGGGACAAGGTGGTTATGGTCAAGTATATAAAGGAAATCTAAGCAACAAGTCCCCTGTTGCTGTGAAGGTACTGAATGCTTCTAAAGGGAACGGAGAAGAATTTATCAACGAGGTTGTAAGCATAAGTAGAACGTCCCACGTAAATATTGTTAATCTCCTTGGTTTTTGTCTTGAAGGCAAGAAGAAAGCTCTTGTCTACGATTTTATGTCTAATGGATCACTTGAAAAGTTTATACGCAGCAACAATTTGGAAACTGATCCACCTTTGAGTTGGAAAAGATTACACCACATTGCTGAAGGGATAGCTAAAGGACTTGAGTACTTGCATAGGGGTTGCAACACTCGGATATTGCATTTTGACATAAAACCAAGCAACATCCTTTTGGACAAAAATTTCTGTCCCAAAATCTCCGATTTTGGGATGGCTAAGCTTTGCTCAAATACACAAAGTATTATATCTATGTATGGTGCTAGAGGGACAGTTGGGTATATAGCTCCAGAAGTGTGGAACAGAAATTTTGGAGGGGTGTCTTACAAGTCTGATGTCTATAGTTATGGAATGATGATTTTGGAAATGGTTGGAGGGAGGCAAAATATCAGCATTCAAGCAAGTCATTCAAGTGAAACATATTTTCCTCATTGGATATATAAGCATGTGGAGGTGGGCAGCAATGTGGCATGGCAAGAAGGTATGACCAAGGAGGAAAATGAAATTTGTAGGAAAATGATTATTGCTGGATTGTGGTGCATACAAACTGTCCCATCTGATAGGCCTCCTATGAGTAGGGTGGTTGAAATGTTAGAAGGAAGCATAGATCAGTTGCAAATTCCTCCAAAGCCATTCATCTTTAGTCCTATCAAATCCGAGTTAAAACTTCCGGCCGCTTTCAAAATAAGCATGCGAGCCTTGAGCATTCAAATCCCCTTGAGTTCCACCATGAGCATGACCACCCATTCCTCCTTCCTTGCCTTCACACTCACCCTTACTTTCTTCTTAACAACTTACTCTCAACAATATGACAATTACTACTCTATTTGCAGCCAATCATTCAGCTGTGGAACTCTCACTAACATATCCTATCCATTCTGGGGAGGGAGCCGCCCACACTTCTGTGGCCACCATGCCTTCAAGCTCTCCTGCATGCATAATCAAAACCCTTCCATTCAACTTGCTTCCCAAAAATTCAATCTACTAAACATCAACCAAACACTTTCCACCGTCAGAATGGTCAGAACAGACCTTGTCTATCGTCCCGATGCCTGCTCTTCCAATTTCACCAACACTTCTCTCACTGCCACTCCCTTTACTTTTCTCCCCACCGTTCACAATGTCACTGCATTATACCAATGCCCTTCACTTGTGGGAAACGCTTACAATTTCACGTGCCACAACCAAAATCATACTCATGAACATGCTTTCTATGTGGTCAATGGAACTCAGCTCACACAGTTGCAGTTACAGTTCCCTGGCCTTAAGAATTGCGGCCTTAGCGTTCTGCTTCACCTTTCACACGATGTTGTTTGGGACTCCGAGGGTGGCCTTGGGGCGCTGGAGAAAGCGCTGGATCAAGGGTTTGATGTGCGCTACGATGCGGAGTTCACTTCTCAGTGCACAGCATGCACAGATTCTGGAGGAGCATGCGGGACCAATCACAATGATTCGTCTCACTTTTCCTGTTATTGCTCACCTGGAATTCCTTCTTCACTCTCAGTCTGCTCTACTCACAAAAGTGGAAGGAAGAACAGAGTGATGAAACTGGTTTTAGGTTTTGTTGCTACTGGATTTGCACTACCTCTAATCGCTGTCATCATATGCCGTAACAAAGCTAGGATTTGGAAATTTATACTAATACAAGTTGGTAAGATAAAAAGGGATGATCGAGTTATAGAAGCCTTCCTTGAAAGTCAAGGTTCTCTGGGTCTAAAAAGATACAGTTTCTCGCATGTTAAGAAAATAACCAACTCCTTCAAAATTAAACTGGGAGAAGGTGGCTATGGTTCTGTATACAAAGGAAAATTGCTGAATGGTTGCTCAGTGGCAGTGAAGATACTGAACGAGTCAAAAGGGAGTGGCGAAGAATTCATCAATGAGGTTGCCAGCATAAGCAAAACATCCCATGTTAATATTGTCTCCCTCCTTGGATTTTGTCTAGATGGAAGCAGAAAAGCTCTCATCTACGAGTTTATGTCCAATGGTTCACTTGAAAAGTACATTCATAAGAAAGCAGCTGAAAATGAAAGTGCTACCCCATCCCTGAGTTGGGAGAGATTGCACCAGATTGCAGTAGGCATAGCTCGAGGACTGGAGTACTTGCATAAAGGATGCAACACTCGGATTCTGCATTTTGACATTAAGCCACACAATATCCTTTTGGATGAAACATATCGGCCCAAGATATCAGATTTTGGGCTTGCTAAGCTGGGCACAAAAGAGGAAAGCATTATTTCAATGTCAAATGCTAGAGGAACAATAGGGTATGTGGCTCCCGAATTGTTGAACAAAAGTTTAGGAGGTGTTTCTCACAAGTCTGATGTTTACAGCTATGGAATGATGCTCCTAGAAATCGTTGGAGGGAAGAAGAATATCAACGTTGAAGCTAGTCGCTCAAGCGAGTTATATTTCCCGCAATTGGTTATTTATAAGAAGCTTGAGCAGGAGAATGATTTAGGAGTTGGTGAGGAAAATGAGATAGCCAAGACAATGACTATGGTGGGCTTGTGGTGCATTCAGACCATTCCCTCTCATAGACCCACCATAACTAAAGTGATTGACATGTTGGAAGCTAGCGTGGATTCTATGGAAATGCCACCAAAGCCTTTCCTGTCTTCTCCTCCAAGATCAGCAACAGATTTTTCCACTGCAATAACCAAATCACTAGACACCATCGTTATTGATCATCAAAGTTAAACGTTTCATCGCTCTGTCTTAATTCTTAATTTTATCATTCTATATATTATGTGTGTCTTCCGGTGTTGAATATGGATCATCACAGTTAGACTAACTGTAACAATCAAATACTTTCTACTTTTTATTTTTAGACAAA 4042 0.4189 AFLCALFLLFTTRTTSGSHNISSSETTCPANKRCKNGPNISYPFWFSQGSPPDQYCGYPELGLICYDNGNTIFAPPPGLNYYVKDIDYASHSLKLVDFDTANKTCPRALHKFPFGNLPLSHSPLNLNLSFYYNCSQYPSGVPSIKCLSSGLNESFVFLMGNETKGFDWLRNCQENVVVTVMKDQITADGGLVNQFAGAMDEGFVLEWQTTASCAQCEASNGVCGYSTTKKETVCFCNDGSTRSNKCQGEEGSSTGLSRLIIGLIIAGGIGALLICILLYSFRRKLKPIVSEIRQAKEIDKDIEAFIRNNGPLPIKRYSYSEIKKMTNCFGSKLGQGGYGQVYKGNLSNKSPVAVKVLNASKGNGEEFINEVVSISRTSHVNIVNLLGFCLEGKKKALVYDFMSNGSLEKFIRSNNLETDPPLSWKRLHHIAEGIAKGLEYLHRGCNTRILHFDIKPSNILLDKNFCPKISDFGMAKLCSNTQSIISMYGARGTVGYIAPEVWNRNFGGVSYKSDVYSYGMMILEMVGGRQNISIQASHSSETYFPHWIYKHVEVGSNVAWQEGMTKEENEICRKMIIAGLWCIQTVPSDRPPMSRVVEMLEGSIDQLQIPPKPFIFSPIKSELKLPAAFKISMRALSIQIPLSSTMSMTTHSSFLAFTLTLTFFLTTYSQQYDNYYSICSQSFSCGTLTNISYPFWGGSRPHFCGHHAFKLSCMHNQNPSIQLASQKFNLLNINQTLSTVRMVRTDLVYRPDACSSNFTNTSLTATPFTFLPTVHNVTALYQCPSLVGNAYNFTCHNQNHTHEHAFYVVNGTQLTQLQLQFPGLKNCGLSVLLHLSHDVVWDSEGGLGALEKALDQGFDVRYDAEFTSQCTACTDSGGACGTNHNDSSHFSCYCSPGIPSSLSVCSTHKSGRKNRVMKLVLGFVATGFALPLIAVIICRNKARIWKFILIQVGKIKRDDRVIEAFLESQGSLGLKRYSFSHVKKITNSFKIKLGEGGYGSVYKGKLLNGCSVAVKILNESKGSGEEFINEVASISKTSHVNIVSLLGFCLDGSRKALIYEFMSNGSLEKYIHKKAAENESATPSLSWERLHQIAVGIARGLEYLHKGCNTRILHFDIKPHNILLDETYRPKISDFGLAKLGTKEESIISMSNARGTIGYVAPELLNKSLGGVSHKSDVYSYGMMLLEIVGGKKNINVEASRSSELYFPQLVIYKKLEQENDLGVGEENEIAKTMTMVGLWCIQTIPSHRPTITKVIDMLEASVDSMEMPPKPFLSSPPRSATDFSTAITKSLDTIVIDHQS 1301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00247 1301 ProSitePatterns Protein kinases ATP-binding region signature. 993 1015 IPR017441 GO:0005524
Pste3g00247 1301 FunFam serine/threonine-protein kinase PBS1-like 296 401 - -
Pste3g00247 1301 SUPERFAMILY Protein kinase-like (PK-like) 968 1260 IPR011009 -
Pste3g00247 1301 Pfam Wall-associated receptor kinase C-terminal 150 239 IPR032872 -
Pste3g00247 1301 Pfam Wall-associated receptor kinase C-terminal 794 895 IPR032872 -
Pste3g00247 1301 Gene3D Phosphorylase Kinase; domain 1 964 1061 - -
Pste3g00247 1301 Gene3D Phosphorylase Kinase; domain 1 304 401 - -
Pste3g00247 1301 FunFam PR5-like receptor kinase 1062 1271 - -
Pste3g00247 1301 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1112 1124 IPR008271 GO:0004672|GO:0006468
Pste3g00247 1301 FunFam PR5-like receptor kinase 402 612 - -
Pste3g00247 1301 ProSiteProfiles Protein kinase domain profile. 327 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste3g00247 1301 PANTHER RUST RESISTANCE KINASE LR10-RELATED 299 620 IPR045874 GO:0004672
Pste3g00247 1301 SUPERFAMILY Protein kinase-like (PK-like) 310 601 IPR011009 -
Pste3g00247 1301 SMART serkin_6 327 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste3g00247 1301 SMART serkin_6 987 1259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste3g00247 1301 Pfam Wall-associated receptor kinase galacturonan-binding 28 97 IPR025287 GO:0030247
Pste3g00247 1301 Pfam Wall-associated receptor kinase galacturonan-binding 679 743 IPR025287 GO:0030247
Pste3g00247 1301 ProSitePatterns Serine/Threonine protein kinases active-site signature. 449 461 IPR008271 GO:0004672|GO:0006468
Pste3g00247 1301 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524
Pste3g00247 1301 ProSiteProfiles Protein kinase domain profile. 987 1274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste3g00247 1301 Pfam Protein tyrosine and serine/threonine kinase 329 600 IPR001245 GO:0004672|GO:0006468
Pste3g00247 1301 Pfam Protein kinase domain 992 1256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste3g00247 1301 Gene3D Transferase(Phosphotransferase) domain 1 402 609 - -
Pste3g00247 1301 Gene3D Transferase(Phosphotransferase) domain 1 1062 1269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00247 Pste-Chr3 1086605 1098993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00247 20 615 Receptor kinase-like Gene Family AT5G38260 39.432 1.22e-134 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pste3g00247 PK_Tyr_Ser-Thr 5.6e-45 CL0016