LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste3g00244	AAGTCATCACCTAGGAAACCATCTTTCTCTTCTTCTCTTTAACCAGGTCAACACAAACCACAACTGAATCAACAACCTTTCGATACAGTTTACATTTGCGGCATCCGAAGTACTGTGACACAGTTGACATCACCGTTTCGAAGTATTATCCGACCAGCGCGTAGTTCGAAGTATTGTCGGCGGCGTGGCATGGTTGGGGTTGTTCCAATGGGGTTTTTGCTTTTGCTTTTCCTTCTTCCGATGACAGCAGAATCTGCGTGCTCTCCGAGGCAGGGTTGTTCCCTGGCACTAGCCTCGTACTACTTGTGGACAGGCTCGAACCTGACCTACATCTCCCAGATCATGGCCTCCAACGTTCTCACGAAACCCGAGGACATAGTGTCCTACAACAAGGACACGGTCCCCAACAAGGACCTCGTCATCGCCGACACAAGGGTCAACGTGCCCTTCCCCTGCGACTGCATCGACGGCGAGTTCCTCGGCCACACTTTTCGGTACGATGTTCAGTCGCAGGACACGTACGAGCACGTTGCCACCTCCGTGTTTTCTAACCTCACCGACGTAGCGTGGCTCAGAAAGTTCAATGACTATCCCCCAAATAACATTCCCGATACGGGGTTTCTCAATGTCACGGTTAATTGTTCTTGTGGGAACAGTGATGTTTCCAATTATGGGTTGTTCGTGACTTACCCTCTCAGGCCAGGGGAGACTCTGGGAACGGTGGCTGCGAATCTCAGCCTTGACTCCGGCTTGTTGCAGAGGTACAATCCTAGTGTCAACTTCAACCAAGGGAGTGGACTCGTTTATGTCCCTGGAAAAGATCAAAATGGTAGCTATGTGCTTTTGCAGTCCAGTTCAGGAGGTCTTGCTGGTGGAGCTATTGCAGGAATAGCTGTTGGAGTTGTGGCAGTTCTTCTGTTATTGGGGGTTTGTATATATGTTGGATATTTCCGGAAGAAGAAAATTCAGAAGGAGGAACTTCTTCCAAGTGATTCCAGTGCACTCTTTGCTCCAGATGGGAAGGATGAAACTTCTCGTAGTGGCACAAATGAAACATCAGGGCCTGGCGGTGCTGCTGTCATCACAGGCATAACAGTAGACAAATCAGTGGAGTTCTCATATGAGGAACTGGCAACTGCCACAGATAACTTCAATTTGGCTAATAAAATTGGTCAAGGTGGTTTTGGGTCTGTCTATTATGCGGAGCTGAGGGGAGAGAAAGCTGCAATCAAGAAGATGGATATGCAAGCATCAAAAGAATTTCTTGCCGAATTGAAAGTGCGGTTGATCGGATATAGTATTGAGGGCTCTCTTTTCCTTGTATATGAATACATTGAAAATGGAAACTTAAGTCAACATCTACGTGGTTCAGGTAGTAGAGACCCACTGCCATGGGCTACTCGGGTGCAGATTGCTTTGGATTCTGCCAGAGGTCTCGAATATATTCACGAGCATACAGTACCTGTATATATTCATCGTGACATAAAGTCAGCAAATATATTAATAGACAAAAACTTCAGGGGGAAGGTTGCTGATTTTGGATTAACTAAACTGACAGAAGTGGGAAGCTCATCACTTCCCACTGGTCGTCTTGTTGGAACATTTGGATACATGCCTCCAGAGTATGCTCAATATGGAGATGTTTCTCCCAAAGTAGATGTGTATGCTTTTGGTGTTGTTCTTTATGAACTTATTTCGGCTAAGGAAGCAATTGTCAAGACGAGTGAATATGAAGCCGACTCAAAGGGCCTTGTAGCTTTGGTCAATCTCGATTTCTCTACTGAAGAATTTGAAGGAGTTCTTAGTCAGCCGGATCCTACTGATGAGCTCTCCAAATTAGTTGATCCAAGGCTTGGGGATAACTACCCAATTGATTCTGTTCGCAAGATGGCACAACTAGCCAAAGCATGTACACAAGACACTCCACAACTCCGTCCTAGTATGAGATCTATTGTGGTTGCTCTTATGACACTTTCTTCAACAACCGATGATTGGGATGTTGGTTCCTTCTATGAAAACCAAAATCTTATAAATCTTATGTCAGGAAGATAGGATGATACAGATAAATTGTTTTGCATTTACAATGACATTTTGTTGAAGCAAATTACGTGTAAAATGGATGTAGGAATGGGAATTTTGTACATTTTACCAGTCAGGACTCATTGTAAAAAATAGTGGGGAGTTTAACAATTTATGATAATTCACAGCCAACCATTGTACACTGTAGTGTTTGAGAGATGCATCTTTTCTTGCCCATGTACATTTATCGTTGTAAATTTGTGTAATAAATTCTATTTCAGTAATATTTGACTATTGGTAATGGATTATACATGTTAGGCA	2340	0.4389	MVGVVPMGFLLLLFLLPMTAESACSPRQGCSLALASYYLWTGSNLTYISQIMASNVLTKPEDIVSYNKDTVPNKDLVIADTRVNVPFPCDCIDGEFLGHTFRYDVQSQDTYEHVATSVFSNLTDVAWLRKFNDYPPNNIPDTGFLNVTVNCSCGNSDVSNYGLFVTYPLRPGETLGTVAANLSLDSGLLQRYNPSVNFNQGSGLVYVPGKDQNGSYVLLQSSSGGLAGGAIAGIAVGVVAVLLLLGVCIYVGYFRKKKIQKEELLPSDSSALFAPDGKDETSRSGTNETSGPGGAAVITGITVDKSVEFSYEELATATDNFNLANKIGQGGFGSVYYAELRGEKAAIKKMDMQASKEFLAELKVRLIGYSIEGSLFLVYEYIENGNLSQHLRGSGSRDPLPWATRVQIALDSARGLEYIHEHTVPVYIHRDIKSANILIDKNFRGKVADFGLTKLTEVGSSSLPTGRLVGTFGYMPPEYAQYGDVSPKVDVYAFGVVLYELISAKEAIVKTSEYEADSKGLVALVNLDFSTEEFEGVLSQPDPTDELSKLVDPRLGDNYPIDSVRKMAQLAKACTQDTPQLRPSMRSIVVALMTLSSTTDDWDVGSFYENQNLINLMSGR	620

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste3g00244	620	SMART	serkin_6	321	594	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste3g00244	620	ProSitePatterns	Protein kinases ATP-binding region signature.	327	349	IPR017441	GO:0005524
	Pste3g00244	620	SUPERFAMILY	Protein kinase-like (PK-like)	303	592	IPR011009	-
	Pste3g00244	620	FunFam	PTI1-like tyrosine-protein kinase 3	382	606	-	-
	Pste3g00244	620	PANTHER	CHITIN ELICITOR RECEPTOR KINASE 1-RELATED	11	606	IPR044812	GO:0019199\|GO:0045087
	Pste3g00244	620	MobiDBLite	consensus disorder prediction	270	295	-	-
	Pste3g00244	620	Gene3D	Phosphorylase Kinase; domain 1	297	381	-	-
	Pste3g00244	620	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	427	439	IPR008271	GO:0004672\|GO:0006468
	Pste3g00244	620	Gene3D	Transferase(Phosphotransferase) domain 1	382	611	-	-
	Pste3g00244	620	Pfam	Protein kinase domain	322	589	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste3g00244	620	ProSiteProfiles	Protein kinase domain profile.	321	595	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste3g00244	Pste-Chr3	1080798	1090092	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste3g00244	10	620	Receptor kinase-like Gene Family	AT3G21630	57.595	0.0	667

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LysM	Pste3g00244		Pkinase	1.5e-34	CL0016