Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00219 TGCACACTACACAACAGAGCAAGAGCAACATTTCGTAAATTCCGTCAATGTAGCTTTGAATTTGAGAGTAGTGTTACCTTTTTGGAACCCACGCCTGCACCACTAGCCTTTTCTTTTTCCTTGTCCTTTTCTTACTTCTCTCTTTCCACTACTCTCTCTACTCTCTACAGTGTCTGTCTCTGTCTCTCAAAAATGGTGGATGACTTCATTGTTTGCATTGATCGGATTATAGCCACCACAGCCTGTTTTGGATCAGTGGATGGAACACACTGTGATGGTGTTGTTTCTGGCAATGGTGGAGAAGGGTGTTCTTCTTCTTCTTCAACAAACAAAGATGATGTTGTTGTTGTTGTTGAGTGTAGGATATGCCAGGAAGAAGATCAAGTTCAAACCATGGAGGCACCTTGTTCTTGTAATGGCACTCTCAAGTTTGCTCATAGGAAGTGTATCCAGAGATGGTGCAATAAGAAGGGAAATACGATTTGTGAAATCTGTAATCAGGCATTTTCACCAAATTATTCTCTTCCACCAGTCAGAAGCAATGCAATTATGGCAATTGATATTAGTCAAGAATGGGGACATAATACTGATCTCCATGTAGCTCTTGCTTCAGCAGAGCACCAGTTGCTGCAAACTGAGTATGAAGATTATGTCATGACAAAAACCAGTAGCATTGCTTGCCTTCGCTCTGTCCCTCTCATTTTGTTGATAATTTTGCTTGTACACCAAGCTTTAATGTTCACAAAGAATACTACTGGGCAAGAAGCATCAATGATCTTTAACTTAGAGATGTCACTTCTTCAACTTGCTGGTATTCTTCTGCCATGCTGTGCAATGGCACGTTCTTGGTATGTCATACAGAGCCGAAGGAGAAGACAGGGTTAAGTGATGGGGAACATAGATGACGTTATCTTCATTGACTGTGACAAAATTGGAGCAGTTATAAACGGACGCAACTTGTTTTTGTTTGTCAAACGTATTGAATTGTATATATAGATAGACCATGCTATGGTGAAATATCACAAAATGAAGTGAACTTTCTAAGCAACTTTCTGCTCCTATTTCTTCCTATGGAAAAGGAAAGGAATAAGTAGAAGCATATCTCAAGTGTAGTGCACAACACACAAGCGTGAATATTAGCGTTTCGTTTGAGGCTGAATCAAAATTTTCTGAGGGTCAAAAAGCCAATAGGTTCTGTATGTTCCACCCCTACAACAATAGTAATGGTATCAATTTATATCAGGCCTTGATATTTTGCTATTTCTCATTGTCACCATGATTAGTAAATTTA 1291 0.3935 CTLHNRARATFRKFRQCSFEFESSVTFLEPTPAPLAFSFSLSFSYFSLSTTLSTLYSVCLCLSKMVDDFIVCIDRIIATTACFGSVDGTHCDGVVSGNGGEGCSSSSSTNKDDVVVVVECRICQEEDQVQTMEAPCSCNGTLKFAHRKCIQRWCNKKGNTICEICNQAFSPNYSLPPVRSNAIMAIDISQEWGHNTDLHVALASAEHQLLQTEYEDYVMTKTSSIACLRSVPLILLIILLVHQALMFTKNTTGQEASMIFNLEMSLLQLAGILLPCCAMARSWYVIQSRRRRQG 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00219 294 Pfam RING-variant domain 120 165 IPR011016 GO:0008270
Pste3g00219 294 SMART ringv_2 119 166 IPR011016 GO:0008270
Pste3g00219 294 CDD RING_CH-C4HC3_MARCH 120 166 - -
Pste3g00219 294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 176 IPR013083 -
Pste3g00219 294 Pfam Protein of unknown function (DUF3675) 171 283 IPR022143 -
Pste3g00219 294 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 65 293 IPR033275 -
Pste3g00219 294 ProSiteProfiles Zinc finger RING-CH-type profile. 112 172 IPR011016 GO:0008270
Pste3g00219 294 SUPERFAMILY RING/U-box 118 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00219 Pste-Chr3 976678 981223 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00219 110 165 C3H Transcription Factor Family AT2G37950 39.344 5.15e-06 44.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g00219 3 976678 981223 Pste3g00219 3 976678 981223 ECH