Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00188 ATGCTACAGATGGAGATGGAAGCTTTGAATCTCACTTTCGTTGAATCTCGCTCTCGCTTATTTTTTCAGATTAGGTGTTCGGATTTTTCTAAGGAAAACCGTTTCCTTTCCTCTTATGATTTTTTGATACGGTTTGAAATTCGATCTTCACCTTTTTTCCACCAAGAAATCAAAATCTTTGCAACTCCATCTTCATCTGCTGTAGAAGGTTCAACTAACGATACCAAAGACATGAAAGATTTAACTGTTCATACTGAAGATTCTTTTTCCTGCTTACTTGAGTTTGCTTCTAACAATGATTTTGAAGGTTTTCAGCTAGCTTTAGATAGGGATGTTTCTGTAATAAATGAAGTCGGCCTCTGGTATGTTCGCCAGATTGGATCTAAACAAATTGTTCTTGAGCACCGAACTCCTTTAATGGTTGCTGCTATGTATGGGAGTATAGATGTTCTAAAACTTATACTCTCATGTCCGGAGGCTGATGTTAATTTCTCCTGTGGGACAGATAAAAGCACTGCCCTTCACTGTGCAGCATCAAGTGGTTCTGTTAATGCAGTTGATGTTGTGAAATTGCTCTTATCAGCCGGTGCTGATAATAACAGCTGTATGGATGCTAATGGAAATCGTCCTGTTGATGTTATTGTTGTTCCTCCCAAGCTTGAAGGTTTGAAAGCAACCCTTCAAGATCTACTTTCAGATAATGCCTTTGATGGGTTTGTTGGTGAGTGTTTTATTCCAGTATCAGTTGATTCATCACGTTCTGATTCATCTGCTCATCTATCATTACCTGAAAATGGGTTGCCATCTTCTCCTATGGCATCAAAGTTTACTGATACAGATATTAATTCTGCTTCTGAGAAGAAAGAATATCCTGTTGATCCATCACTTCCTGATATAAAGAACAGCATTTATGCTACAGATGAGTTTCGCATGTTTTCATTCAAGAATGCCAGGAGGAGAGACCCCAGAAAGTTCCATTACAGCTGTGTTCCATGCCCTGAGTTTAGAAAGGGTGCTTGTAGACGAGGGGACATGTGTGAATATGCTCATGGAGTATTTGAGTGCTGGCTACACCCTGCCCAGTATCGGACCAGGCTATGCAAAGATGGTACTAGTTGCAATAGAAGGGTATGCTTTTTTGCCCACACAGCAGAAGAGCTGCGTCCGTTGTACGTGTCCACTGGATCTGCTGTTCCTTCACCCCGCTCAGCTGCCTCTACTCCTAATGTAATGGACATGGCTGCTGCAATGAGCGTCTTTCCTGGTTCACCATCATCAATTTCTTCTGTGTCTCCATCTCCCTTTGCACAGCCGATGTCTCCATCTGCAAGCAGCATTTCTCACTCATCTGCTTGGCCACAGCCAAATGTTCCAGCTCTTCATTTACCAGGAAGCAATATCCAAACTAGTCGATTGAGATCTTCTCTTAATGCTCGTGACATGGCACCTGAAGACTTGAATGTGTTGCAAGATTTTGATGGTCAGCATCACCTTTTGAATGACTTGGGTTTCTCGCTGCCTCGTCCTGGTGCCATTTCAGTGTGTCGTTCTGGTCGGTCCAAGACACTAACTCCATCAAATCTTGATGATCTATTTTCAGCTGAAATTTCTTCATCTCCTCGGTATTCTGACCCAGCAGCAGCTTCTGTATTTTCCCCAACACACAAATCAGCTGTTTTGAATCAGTTTCAGCAGCTTCAGAGCTCGTTATCACCCATTAATACAAGTGTCTCTTCTCCTAGGAATGTTGAACATCCTCTTTTACAAGCTTCATTTGGTGTCTCTTCTCCTGGAAGAATGTCACCAAGAAGTACAGAGCCAATCTCTCTGATGAGCACCCGATTATCAGCATTTGCGCAGCGTGAGAAACAATACCTACAGCTAAGAAGCCTTAGTTCAAGGGACTTTGGTGTCAACAATCCTGTCTCAATTGTTGGATCCCCTGTTAACTCCTGGTCTAATTGGGGATCTTCTCATGGGAATGGAAAAGTAGATTGGTCAGTGAATGTAAATGAGCTTGGTCGTTTGCAAAGATCATCCTCATTTGATCTTCGAAACAATGGGGAGGAGCCTGATTTATCTTGGGTTCAATCCCTTGTCAAGGAATCTCCATCTGATATAAAAGAGAAGTTGGCAGGTTCTAGCCCTGTTGCATCTGTTGATAAACTGAATTTCAATCCTCAAGTTGAGTCTATTGATCAATCTGTTCTAGGAGCCTGGCTTGAGCAAATGCAGCTGGATCAGCTTGTAGTCTAA 2256 0.4229 MLQMEMEALNLTFVESRSRLFFQIRCSDFSKENRFLSSYDFLIRFEIRSSPFFHQEIKIFATPSSSAVEGSTNDTKDMKDLTVHTEDSFSCLLEFASNNDFEGFQLALDRDVSVINEVGLWYVRQIGSKQIVLEHRTPLMVAAMYGSIDVLKLILSCPEADVNFSCGTDKSTALHCAASSGSVNAVDVVKLLLSAGADNNSCMDANGNRPVDVIVVPPKLEGLKATLQDLLSDNAFDGFVGECFIPVSVDSSRSDSSAHLSLPENGLPSSPMASKFTDTDINSASEKKEYPVDPSLPDIKNSIYATDEFRMFSFKNARRRDPRKFHYSCVPCPEFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSAASTPNVMDMAAAMSVFPGSPSSISSVSPSPFAQPMSPSASSISHSSAWPQPNVPALHLPGSNIQTSRLRSSLNARDMAPEDLNVLQDFDGQHHLLNDLGFSLPRPGAISVCRSGRSKTLTPSNLDDLFSAEISSSPRYSDPAAASVFSPTHKSAVLNQFQQLQSSLSPINTSVSSPRNVEHPLLQASFGVSSPGRMSPRSTEPISLMSTRLSAFAQREKQYLQLRSLSSRDFGVNNPVSIVGSPVNSWSNWGSSHGNGKVDWSVNVNELGRLQRSSSFDLRNNGEEPDLSWVQSLVKESPSDIKEKLAGSSPVASVDKLNFNPQVESIDQSVLGAWLEQMQLDQLVV 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00188 751 SMART ANK_2a 87 117 IPR002110 GO:0005515
Pste3g00188 751 SMART ANK_2a 134 164 IPR002110 GO:0005515
Pste3g00188 751 SMART ANK_2a 169 201 IPR002110 GO:0005515
Pste3g00188 751 Gene3D - 327 389 - -
Pste3g00188 751 MobiDBLite consensus disorder prediction 258 277 - -
Pste3g00188 751 SMART c3hfinal6 361 384 IPR000571 GO:0046872
Pste3g00188 751 SMART c3hfinal6 326 352 IPR000571 GO:0046872
Pste3g00188 751 Gene3D - 59 223 IPR036770 -
Pste3g00188 751 ProSiteProfiles Ankyrin repeat profile. 169 204 IPR002110 GO:0005515
Pste3g00188 751 Pfam Ankyrin repeats (3 copies) 124 200 IPR002110 GO:0005515
Pste3g00188 751 Pfam CCCH-type zinc finger 331 351 IPR041367 -
Pste3g00188 751 ProSiteProfiles Zinc finger C3H1-type profile. 331 353 IPR000571 GO:0046872
Pste3g00188 751 SUPERFAMILY Ankyrin repeat 80 215 IPR036770 -
Pste3g00188 751 FunFam Zinc finger CCCH domain-containing protein 327 389 - -
Pste3g00188 751 PANTHER UNKEMPT FAMILY MEMBER 94 703 IPR045234 -
Pste3g00188 751 ProSiteProfiles Ankyrin repeat region circular profile. 169 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00188 Pste-Chr3 791691 796079 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00188 55 748 C2H2 Transcription Factor Family AT5G12850 51.832 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pste3g00188 Ank_2 5.8e-10 CL0465