Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00168 AGCCTTGACACAGACGAAAGATGGGTGGTTTTTGTTGGACCTCATGAGCACCATTCAAACCTCGTTTCTTGGAGGCAAAGTTTGGCTGAGGTGGTAGAGATTGGTCTTGATCACCAAGGCAATGTCACTGGAATCTACTCAGATACACGTGCAGTTGCTCAGCTTCTTTATCACTATAAAGCCTTTGCAAGCTTTGATTTCGCAGCCAGTGGTCCATACGTGGAGATTGACATGAGGTCAGGGAAGAGTGATGGGTATGATGCTGTGTTCCTCAGTCCACATAAGTTTCTGGGTGGCCCTGACTTTCCAGGAGTACTCCTCATGAACAAAGCCCTCTACCTTCTACGATCTTCACCACCCTCCACTTGTGGAGGTGGAAACGTGACTTATAAACGCATCTCCGATAGATTAATGATGATGCCATGTGGTGTCTTGGTATGCTGTTTGAATACAAAATCCAATCATAGGGGCTCACTGATTTCCAAGATTGTGGCTTCAGTACCACCAAGAAAGAATGGAGTTGAAGAGTTTTTGAGTTCAAAGAATGACAACTTGGTTTTTGTTCGCATGTCTGCATTGGTGCTTTTCAAGAAGGCTCATGAGTTGTCCACTCTTTGCGATGCTGAGATTGCCCTCATAGTCTTTTCCGCTACTAGCAAGCTCTTTGAGTATGCTACTTCAAGGGAGAGGTTGGACAAAATGCTTGCCAAAGTTGATCTAACAAATGAGCAACTACTTAAAATGCTTGTCAAAAGTCAACTCCAACGTCCTTTAGAAGTGGAAATTGAACTAAATCATCCCATCGAGGCTGCATCACGAGGCTATTCATTCATTATAAGCTTCTCAAAATCCACGGCATTGCGTGAGCGTATTCTGCCTTTTTGTATGGGTGAAGTCTGGGTAACAACTGCTTGCTTGGCTTTAATCGAAGCAACCACTTCTGATTATAATTCAAGTGCCGCTTGGCATAGAAAAGGAGCTCTTTCTTTTCTCACTGCGATCTCACTTCACGGTTTCGATTTGCAGCTTTTCCTTGTGATTTTTGTGATATTTTCCTTTGCGACTCATCTCTTGCAATCCCACTTTGCGGTTTCGGATAGAGTTTTCAGATCTTGCAATTCCAGATTTTGTGATTTGTGTTGCACTGTTGTTGTCTCTGCCTTT 1164 0.4347 SLDTDERWVVFVGPHEHHSNLVSWRQSLAEVVEIGLDHQGNVTGIYSDTRAVAQLLYHYKAFASFDFAASGPYVEIDMRSGKSDGYDAVFLSPHKFLGGPDFPGVLLMNKALYLLRSSPPSTCGGGNVTYKRISDRLMMMPCGVLVCCLNTKSNHRGSLISKIVASVPPRKNGVEEFLSSKNDNLVFVRMSALVLFKKAHELSTLCDAEIALIVFSATSKLFEYATSRERLDKMLAKVDLTNEQLLKMLVKSQLQRPLEVEIELNHPIEAASRGYSFIISFSKSTALRERILPFCMGEVWVTTACLALIEATTSDYNSSAAWHRKGALSFLTAISLHGFDLQLFLVIFVIFSFATHLLQSHFAVSDRVFRSCNSRFCDLCCTVVVSAF 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00168 388 SUPERFAMILY PLP-dependent transferases 5 129 IPR015424 -
Pste3g00168 388 PANTHER CYSTEINE DESULFURASE 6 37 - -
Pste3g00168 388 Gene3D - 179 253 IPR036879 GO:0003677|GO:0046983
Pste3g00168 388 Pfam Aminotransferase class-V 36 133 IPR000192 -
Pste3g00168 388 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 195 224 IPR002100 GO:0003677|GO:0046983
Pste3g00168 388 SMART madsneu2 168 227 IPR002100 GO:0003677|GO:0046983
Pste3g00168 388 Gene3D - 34 140 IPR015421 GO:0003824
Pste3g00168 388 PRINTS MADS domain signature 205 226 IPR002100 GO:0003677|GO:0046983
Pste3g00168 388 PRINTS MADS domain signature 190 205 IPR002100 GO:0003677|GO:0046983
Pste3g00168 388 SUPERFAMILY SRF-like 195 237 IPR036879 GO:0003677|GO:0046983
Pste3g00168 388 ProSiteProfiles MADS-box domain profile. 195 228 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00168 Pste-Chr3 716158 736990 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00168 195 230 MADS-box Gene Family AT4G24540 69.444 9.99e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pste3g00168 Aminotran_5 5.5e-05 CL0061