Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00084 ATGGCCACCTCCGAAGAGAAGGAGCTTCCTAATCAATTTCCGATGGGTCTTAGAGTCTTTGTTATCGATTATGATTCAGCTGTTCTTGAAAGCATTAGACAAATGTGTATTGATTGTCATTACAAAGTTGTTACATGCTCTAACGCTCTAGATGCATTGAATCATTTGCGAGACAACAAAGATTGTATTGATGTGATACTCATTGATGTTCACATGTCAGATAAGGATGGGGGTGATGCCTATAAATTCCTTGAGAGCAATTGCAAGGAAATTAACGTTCCTGTTGTTGTGCAATTGGCAGTGATGTCTGTGGATGATGACGTGAGTGCTAGGATGAAGTCTATTAGACATGAGATCTGTGATTATTGGAGAAAACCAGTGAGCGAGGAAAAGATTCGTCATTTGTGGATGCATGTGGCTAGGAAAGTCTGGAAAGAGACTAAACTAGGTATAAAATTTGGCAGCTTCACTCTGGAAGACGAGGATAGAAAAAAAGTGGGGAAAGATGATTCTGAATGTGGTATCGAGGAAGCAGGAACGGGAAGAGGAGTTGTTGTTGTAAGGGACCAAACAAGAAGCAATTCCAAAGAATGTGAGGTTGATATTGAAGCAGATAAATATGCGCCTCCACCTAAGAAGCCCCGTGTAATATGGGGAGATAACCTGCATAAGTTATTCGTCAAGGCTGTAATGGAAATTGGGCTTGATAAGGCTGTGCCAAAGAGAATTCTTGAAGTGATGAATGTCCCTTATCTGACAAGAGAGAATGTGGCTAGTCATTTGCAGAAATTTAGACATCAGCTGAGAAGTAAATGGGATGGTGGAATGAGAGTGAAAGGGAAGGAGAATGGGATGATGGGGTTGGAAAAGAAGGGTGTGGGTGAAACAGTGAGAATGGAAAAAGAAGAGGAGGAATGGCATGGTGGAGGAGGACAAATAACGTATAATAGTTATCCTGACATGAGTGTGAGTGAGGACATGATGGGTAGGTTGGAGCAAGAGGCAACAACAATGCATGAATCAATCAACAATAATAATAATAATAAGAAGAAGAAGTTGGAGTCGCAGATGGAAGGGTATAGTATGGAATCAGCTCCGGCGGTGACAACTGCAAATACACAACTTTCCTATGACTTTGACTGCCTCTATCAAGACTACCCTTATCTGATGACTCTTGGACCGCTTCTCAATGAAAATCTCCCACTCCCACCACGCCTAGCTGAGGACTGGCCA 1233 0.4209 MATSEEKELPNQFPMGLRVFVIDYDSAVLESIRQMCIDCHYKVVTCSNALDALNHLRDNKDCIDVILIDVHMSDKDGGDAYKFLESNCKEINVPVVVQLAVMSVDDDVSARMKSIRHEICDYWRKPVSEEKIRHLWMHVARKVWKETKLGIKFGSFTLEDEDRKKVGKDDSECGIEEAGTGRGVVVVRDQTRSNSKECEVDIEADKYAPPPKKPRVIWGDNLHKLFVKAVMEIGLDKAVPKRILEVMNVPYLTRENVASHLQKFRHQLRSKWDGGMRVKGKENGMMGLEKKGVGETVRMEKEEEEWHGGGGQITYNSYPDMSVSEDMMGRLEQEATTMHESINNNNNNKKKKLESQMEGYSMESAPAVTTANTQLSYDFDCLYQDYPYLMTLGPLLNENLPLPPRLAEDWP 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00084 411 CDD REC_typeB_ARR-like 19 140 - -
Pste3g00084 411 SUPERFAMILY CheY-like 16 149 IPR011006 -
Pste3g00084 411 Coils Coil 343 363 - -
Pste3g00084 411 Pfam Response regulator receiver domain 19 134 IPR001789 GO:0000160
Pste3g00084 411 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 326 IPR045279 GO:0009736
Pste3g00084 411 ProSiteProfiles Response regulatory domain profile. 18 140 IPR001789 GO:0000160
Pste3g00084 411 Gene3D - 17 149 - -
Pste3g00084 411 FunFam Two-component response regulator 210 271 - -
Pste3g00084 411 SUPERFAMILY Homeodomain-like 211 270 IPR009057 -
Pste3g00084 411 SMART REC_2 17 136 IPR001789 GO:0000160
Pste3g00084 411 NCBIfam myb-like DNA-binding domain, SHAQKYF class 213 266 IPR006447 GO:0003677
Pste3g00084 411 Gene3D - 211 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00084 Pste-Chr3 408789 410486 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00084 1 269 Response Regulator Gene Family AT2G25180 36.803 7.73e-44 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pste3g00084 Response_reg 3.2e-11 CL0304