Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00081 ATGGATGGCCATGCAGTACCCGGCCACCGCCATGGCCATGATGCAGCAGCAGATGATGATGTACCCGCAGCATTACGTGCCCTATGTCCACCCCCATTACCACCCGCCGCCGCCGCCTCCTCCCACCACCACCACCATGGCAGCAAACAAACCGCCTCCTCCGCCGCCTCTGCCGCCGCCTCCGCCGACGAGATCAGGACCATCTGGCTCGGCGACCTCCACCATTGGATGGACGAGAACTACCTCCATAACTGCTTCGCTCACACCGGCGAGGTTGTATCGGCTAAGGTAATCCGGAATAAGCAGACTGGTCAGTCTGAGGGATATGGATTTGTGGAATTCTATTCACGAGGGACGGCTGAGAAAGTCTTGCAGAACTATAATGGCACCATGATGCCCAATACAGATCAGGCATTCCGTCTGAATTGGGCCACATTCAGTGCCGGGGATAGGCGTTCTTCTGATGCTACTTCTGATCTCTCTATATTTGTGGGGGATTTGGCCATTGATGTGACTGATGCTATGCTGCAAGAGACTTTCGCTGGCAGATATTCGTCTATTAAGGGGGCAAAAGTTGTCATTGATTCTAATACAGGCCGTTCAAAAGGCTATGGTTTTGTCAGATTTGGTGATGAAAATGAGAGAACAAGGGCAATGACTGAGATGAATGGCGTTTATTGTTCTAGTAGGCCCATGAGAATAGGTGTTGCAACGCCCAAGAAAACATACGGTTATCAACAGCAATATTCTTCTCAAGCTGTGGTTTTAGCTGGTGGACACTCAGCTAATGGTGCTGTAGCCCAAGGTTCCCAGTCTGAAGGGGACTTAAATAACACTACTATATTTGTTGGAGGGCTTGATTCTGATATCAGCGATGAGGATCTCAGACAACCATTTTTGCAATTTGGAGAGGTTGTCTCTGTGAAAATTCCAGTGGGTAAAGGGTGTGGATTTGTTCAGTTTGCTGACAGAAAGAATGCTGAGGAAGCAATTCAAGCATTGAATGGAACAGTAATTGGGAAGCAGACCGTGCGTCTTTCTTGGGGTCGCAGTCCAGGAAATAAGCATTGGAGAAATGATTCCAATGGAGGCCATTATGGTGGAGGTCAGGGTTATGGAGGCCATGGATTTGCTGTGAGACAGAATCAGGATATAGCCATGCAACCTGCTGCCGCAGTTCAAGGGGCTTCCTAACGGGGCTTAGCAAAACTCTGTTGAAGTAGGATGGATTTATTGCTCCGCTAAACTGTAGTATTATTTTAAACTTGTAGCTGGGTTATACAGTATGCGAAGCTCTTAAGATTGTATGAAAATGACTGAAATTTTGGATTGAACCCGACCATATATAATATGATTCGGGTATTTTTGTTTTTTTATTAAACCTTAAAACCATATTGGTAGCAGACGGTTAAGATTATTTTAAATACTTTACAGTACAATGTACTGCTTGCAAAAAATCCTTGCACAGGCTGAATCTGAGGTTCATTGAGTTTTTC 1496 0.4626 MDGHAVPGHRHGHDAAADDDVPAALRALCPPPLPPAAAASSHHHHHGSKQTASSAASAAASADEIRTIWLGDLHHWMDENYLHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRGTAEKVLQNYNGTMMPNTDQAFRLNWATFSAGDRRSSDATSDLSIFVGDLAIDVTDAMLQETFAGRYSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVYCSSRPMRIGVATPKKTYGYQQQYSSQAVVLAGGHSANGAVAQGSQSEGDLNNTTIFVGGLDSDISDEDLRQPFLQFGEVVSVKIPVGKGCGFVQFADRKNAEEAIQALNGTVIGKQTVRLSWGRSPGNKHWRNDSNGGHYGGGQGYGGHGFAVRQNQDIAMQPAAAVQGAS 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00081 397 CDD RRM2_SECp43_like 159 238 - -
Pste3g00081 397 FunFam Polyadenylate-binding protein RBP47B 147 250 - -
Pste3g00081 397 SUPERFAMILY RNA-binding domain, RBD 158 255 IPR035979 GO:0003676
Pste3g00081 397 SUPERFAMILY RNA-binding domain, RBD 270 376 IPR035979 GO:0003676
Pste3g00081 397 Gene3D - 65 145 IPR012677 -
Pste3g00081 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 239 IPR000504 GO:0003723
Pste3g00081 397 MobiDBLite consensus disorder prediction 25 57 - -
Pste3g00081 397 SUPERFAMILY RNA-binding domain, RBD 43 148 IPR035979 GO:0003676
Pste3g00081 397 FunFam Polyadenylate-binding protein RBP47B 65 145 - -
Pste3g00081 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 279 351 IPR000504 GO:0003723
Pste3g00081 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 68 135 IPR000504 GO:0003723
Pste3g00081 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 162 231 IPR000504 GO:0003723
Pste3g00081 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 281 344 IPR000504 GO:0003723
Pste3g00081 397 Gene3D - 259 382 IPR012677 -
Pste3g00081 397 SMART rrm1_1 67 142 IPR000504 GO:0003723
Pste3g00081 397 SMART rrm1_1 161 235 IPR000504 GO:0003723
Pste3g00081 397 SMART rrm1_1 280 347 IPR000504 GO:0003723
Pste3g00081 397 MobiDBLite consensus disorder prediction 350 369 - -
Pste3g00081 397 CDD RRM1_SECp43_like 67 147 - -
Pste3g00081 397 Gene3D - 147 253 IPR012677 -
Pste3g00081 397 FunFam Polyadenylate-binding protein RBP47 261 378 - -
Pste3g00081 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 66 146 IPR000504 GO:0003723
Pste3g00081 397 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 59 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00081 Pste-Chr3 393645 396961 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00081 68 358 Eukaryotic Initiation Factors Gene Family AT4G34110 30.872 1.19e-29 119