Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00075 ATGGTTGGTTCCTCTTCGCGCTTTTCTCACACTCCTTGGTTTACAGGAGAGGCAGTGAACCCAAAGGCTTACCCTTTGGCCGACGCGCAACTCACAATAACAATACTCGATCTTGTCCAACAAGCTGCCAACTACAAGCAGCTCAAAAAGGGTGCCAATGAAGCGACGAAGACACTAAACAGAGGCATTTCTGAGTTCGTTGTGATGGCGGCTGACACTGAGCCTCTCGAGATTCTTCTCCATCTTCCACTCCTTGCTGAGGATAAGAACGTTCCCTATGTATTTGTTCCATCAAAACAAGCACTTGGGCGAGCATGTGGCGTCACACGGCCAGTGATTGCATGTTCTGTGACAACCAACGAGGGAAGTCAACTGAAATCCCAAATTCAGCAACTAAAGGATGCCATTGAGAAGCTGTTAATCTGAAAATTGATATTCGGTATGATGGGCTTCTTTAGAAGCTTTGACTGGACGAGTTGTATTGTTCAACAGGCATAGGTGTTTCATGTTATATGTTTATTTCTGCCACTAAAGTTTGTTTTGGAAGTAATTTTGAAGATAGTACAACTTTAGTTTTTCACTGCCATTATAAATTGATCAATGCTGTGTGTGGGGGTGCTGTTAAGAAAATTTAAACTGCTTCATTTTTTTTTCTTGTTGATTTAATGACTTTTTTTTTTTATCCCATTAAATTGTTTTTTT 702 0.4088 MVGSSSRFSHTPWFTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00075 141 Gene3D - 13 141 IPR029064 -
Pste3g00075 141 PRINTS High mobility group-like nuclear protein signature 95 107 IPR002415 GO:0003723|GO:0005730
Pste3g00075 141 PRINTS High mobility group-like nuclear protein signature 34 49 IPR002415 GO:0003723|GO:0005730
Pste3g00075 141 PRINTS High mobility group-like nuclear protein signature 21 34 IPR002415 GO:0003723|GO:0005730
Pste3g00075 141 PRINTS High mobility group-like nuclear protein signature 51 61 IPR002415 GO:0003723|GO:0005730
Pste3g00075 141 ProSitePatterns Ribosomal protein L7Ae signature. 86 103 IPR004037 GO:0042254|GO:1990904
Pste3g00075 141 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 17 138 - -
Pste3g00075 141 PRINTS Ribosomal protein L7A/RS6 family signature 93 107 IPR018492 -
Pste3g00075 141 PRINTS Ribosomal protein L7A/RS6 family signature 48 62 IPR018492 -
Pste3g00075 141 PRINTS Ribosomal protein L7A/RS6 family signature 67 80 IPR018492 -
Pste3g00075 141 PRINTS Ribosomal protein L7A/RS6 family signature 83 93 IPR018492 -
Pste3g00075 141 SUPERFAMILY L30e-like 19 139 IPR029064 -
Pste3g00075 141 FunFam NHP2-like protein 1 homolog 15 141 - -
Pste3g00075 141 CDD SNU13 20 141 - -
Pste3g00075 141 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 36 124 IPR004038 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00075 Pste-Chr3 361023 363351 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00075 48 137 Cytoplasmic Ribosomal Protein Gene Family AT2G47610 28.889 3.86e-06 43.1