Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00049 TTAAAAGTGATATAGCCTTGCCTTGAGAGTTGAGTTTGGAGGTTTTGGCGATGGTGAAATCGAAAGAGAATGGTTCGGTCCCTCCTTTCCTGAAGAAATGTTACGATATGGTGGAAGACCACAACACCGACTCTATCATCCGTTGGACCCACGCCGGCGACACTTTTCTCATCTCCGACATCACTCAATTCTCCGTCACTCTCCTTCCCTCCTATTTCAAACACAACAACTTCTCCAGTTTCATCCGACAACTCAATATCTACGGTTTCAGGAAAATTGATACGGACTGTTGGGAATTTGCCAATGAAAATTTTGTCAGGGGTCAAAAGCATCTGTTGATGAATATACGTAGAAGGAAACATCCACACAGTGCAGATCAGCAAAAAACATTGCCACAGCAGGACAATTGTGAAGAACTATCACAAGAAGCACCTGGTCATGGTCTTTGGAAAGAAGTTGAGAATCTAAAACTTGATAAAAATTTACTCACGCAGGAATTGGTCAAACTTAGGCAACACCAGGAATCTGCTGAGAATAAGTTGCTGCTCTTGAGTGATCGCCTTCAAGGAATGGAAAAGCATCAGCAACAGATGTTATCATTCTTAGTCATGGTCGTGCAAAGCCCTGGGTTCATGGTTCAGCTGCTTCATCCTAAGGAAAATAATTGGCGTTTGGCTGAATCATGGAATATATTGGACCAAGATAAACAAGATGACAAACCTGTTGCTTCTGATGGTATGATAATAAAGTATAAACCACCTGCAGGTGAGAAACTAAAAACTGTAGTTCCATTATCTCCTGGTTTTGATCAGCAACCAGAAGCTGAGCTTTCTGCAGATGGGCTAAAAGACTTGTGCATCAGTTCTGAATTCTTGAAAGTACTTCTGGATGAAAAATTGTCTCCATTAGAAAATCATTCTCCATTTCTCTTACCAGATTTACATGATGATGGCTCATGGGAACAGCTTTTTCTGGGTAGTCCTTTCCTGGGAAACATTCAAGATTCTAATAAAGAAAGTGAGGGGCACACCGAAACTGGAATGGAGATGGAACCCACAATATCCGAGTCTCCAAATGAAAACTATCGAACTTTTGAATCGATGATAGTAGAAATGGAGAGAGCTCACGAGTGAGTTAGATTGTATGCACATGGTGTTAATTTGGAGGAGTTTGGAATCTTACTAACAATATATAGGGTAGAAAGAAATAATGTCCATCAGATGTTTTTCAGCTGGGCTGTCTTCACAGATTACTTCACAATATAATTATATCATAGTATTAAGTGGCAATTTAATTATTTTCTCATGCAACTTCCTCCTGCGCTTGTTAGATCTTCATCTAGAGCCAGTGTAAGTCTTTTCTTTAATCCCATGAGATGCTAAGTATATATGGTAGTATGTTTTTCTGTGTTGTTTGATAGAATGCTTGAACATAATTTAGACTATTGAGGTTCTGTTAATATCCTACTGTGTGTAGTTTCAATCTGAAAACTAATCCTGATGTTTCTCGTTGGCAGAGTTTGGCATCCTTATTAAGTGGGAGACTGGGAGTTGTATGGTAGTGCGGCTACCTATAAATGATTGATCAAATTTTTTTATTTGGAGAATTGTAAACGGCACCTTTATTATTTTTGTGTCACTTTAAACAGTTGCACATGCTTTTACATATTATAAAATTTCATAAAATTCATGCTGCATGTGCATGTCATTGCAGAAGCCTGAG 1722 0.3885 MVKSKENGSVPPFLKKCYDMVEDHNTDSIIRWTHAGDTFLISDITQFSVTLLPSYFKHNNFSSFIRQLNIYGFRKIDTDCWEFANENFVRGQKHLLMNIRRRKHPHSADQQKTLPQQDNCEELSQEAPGHGLWKEVENLKLDKNLLTQELVKLRQHQESAENKLLLLSDRLQGMEKHQQQMLSFLVMVVQSPGFMVQLLHPKENNWRLAESWNILDQDKQDDKPVASDGMIIKYKPPAGEKLKTVVPLSPGFDQQPEAELSADGLKDLCISSEFLKVLLDEKLSPLENHSPFLLPDLHDDGSWEQLFLGSPFLGNIQDSNKESEGHTETGMEMEPTISESPNENYRTFESMIVEMERAHE 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00049 360 FunFam Heat stress transcription factor B-4 5 103 - -
Pste3g00049 360 SUPERFAMILY "Winged helix" DNA-binding domain 9 102 IPR036390 -
Pste3g00049 360 Coils Coil 136 163 - -
Pste3g00049 360 SMART hsfneu3 9 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste3g00049 360 Pfam HSF-type DNA-binding 13 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste3g00049 360 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 227 IPR027725 -
Pste3g00049 360 MobiDBLite consensus disorder prediction 317 345 - -
Pste3g00049 360 PRINTS Heat shock factor (HSF) domain signature 51 63 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste3g00049 360 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste3g00049 360 PRINTS Heat shock factor (HSF) domain signature 13 36 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste3g00049 360 Gene3D - 5 103 IPR036388 -
Pste3g00049 360 ProSitePatterns HSF-type DNA-binding domain signature. 52 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00049 Pste-Chr3 222799 225561 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00049 10 311 HSF AT1G67970 49.508 4.05e-94 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pste3g00049 HSF_DNA-bind 2.2e-30 CL0123