Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00046 TTGACCTCTCCAAACCTTTCCGTTCTTCGCTTTCCCTCTCCCGGACCGTTCCGTTTTCGCTTTCCCTCTCCTGGCCCCTCCGGTTCCCAGTTGAGCCACTCCGCACTTAACATGGAGATGGAAGCTTTGAATCTCACTTTCGTTGAATCTCGCTCTCGCTTATTTTTTCAGATTCGGCGTTCGGATTTTTCTAAGGAAAACCGTTTCCTTTCCTCTTATGATTTTTTGATACGTTTGTTTCATAACTTTCTGGGCATGTGCGGTGGTCCAGAGAAATCAAAATCTTTTGCAACTCCATCTTCATCTGCTGTAGAAGGTTCAACTAACGATACCAAAGACATGAAAGATTTAACTGTTCATACTGAAGATTCTTTTTCCTGCTTACTTGAGTTTGCTTCTAACAATGATTTTGAAGGTTTTCAGCTAGCTTTAGATAGGGATGTTTCTGTAATAAATGAAGTCGGCCTCTGGTATGTTCGCCAGATTGGATCTAAACAAATTGTTCTTGAGCACCGAACTCCTTTAATGGTTGCTGCTATGTATGGGAGTATAGATGTTCTAAAACTTATACTCTCATGTCCGGAGGCTGATGTTAATTTCTCCTGTGGGACAGATAAAAGCACTGCCCTTCACTGTGCAGCATCAAGTGGTTCTGTTAATGCAGTTGATGTTGTGAAATTGCTCTTATCAGCCGGTGCTGATAATAACAGCTGTATGGATGCTAATGGAAATCGTCCTGTTGATGTTATTGTTGTTCCTCCCAAGCTTGAAGGTTTGAAAGCAACCTTCAAGATCTACTTTCAGATAATGCCTTTGATGGTATCAGTTGATTCATCACGTTCTGATTCATCTGCTCATCTATCATTACCTGAAAATGGGTTGCCATCTTCTCCTATGGCATCAAAGTTTACTGATACAGATATTAATTCTGCTTCTGAGAAGAAAGAATATCCTGTTGATCCATCACTTCCTGATATAAAGAACAGCATTTATGCTACAGATGAGTTTCGCATGTTTTCATTCAAGGCATATTCCCATGATTGGACTGAATGCCCTTTTGTTCATCCTGGAGAGAATGCCAGGAGGAGAGACCCCAGAAAGTTCCATTACAGCTGTGTTCCATGCCCTGAGTTTAGAAAGGGTGCTTGTAGACGAGGGGACATGTGTGAATATGCTCATGGAGTATTTGAGTGCTGGCTACACCCTGCCCAGTATCGGACCAGGCTATGCAAAGATGGTACTAGTTGCAATAGAAGGGTATGCTTTTTTGCCCACACAGCAGAAGAGCTGCGTCCGTTGTACGTGTCCACTGGATCTGCTGTTCCTTCACCCCGCTCAGCTGCCTCTACTCCTAATGTAATGGACATGGCTGCTGCAATGAGCGTCTTTCCTGGTTCACCATCATCAATTTCTTCTGTGTCTCCATCTCCCTTTGCACAGCCGATGTCTCCATCTGCAAGCAGCATTTCTCACTCATCTGCTTGGCCACAGCCAAATGTTCCAGCTCTTCATTTACCAGGAAGCAATATCCAAACTAGTCGATTGAGATCTTCTCTTAATGCTCGTGACATGGCACCTGAAGACTTGAATGTGTTGCAAGATTTTGATGGTCAGCATCACCTTTTGAATGACTTGGGTTTCTCGCTGCCTCGTCCTGGTGCCATTTCAGTGTGTCGTTCTGGTCGGTCCAAGACACTAACTCCATCAAATCTTGATGATCTATTTTCAGCTGAAATTTCTTCATCTCCTCGGTATTCTGACCCAGCAGCAGCTTCTGTATTTTCCCCAACACACAAATCAGCTGTTTTGAATCAGTTTCAGCAGCTTCAGAGCTCGTTATCACCCATTAATACAAGTGTCTCTTCTCCTAGGAATGTTGAACATCCTCTTTACAAGCTTCATTTGGTAATGTCACCAAGAAGTACAGAGCCAATCTCTCTGATGAGCACCCGATTATCAGCATTTGCGCAGCGTGAGAAACAATACCTACAGCTAAGAAGCCTTAGTTCAAGGGACTTTGGTGTCAACAATCCTGTCTCAATTGTTGGATCCCTGTTAACTCCTGGTCTAATTGGGGATCTTCTCATGGAATGGAAAAATTGGTCAGTGAATGTAAATGAGCTTGGTCGTTTGCAAAGATCATCCTCATTTGATCTTCGAAACAATGGGGAGGAGCCTGATTTATCTTGGTTGGCAGGTTCTAGCCCTGTTGCATCTGTTGATAAACTGAATTTCAATCCTCAAGTTGAGTCTATTGATCAATCTGTTCTAGGAGCCTGGCTTGAGCAAATGCAGCTGGATCAGCTTGTAGTCTAA 2316 0.4331 LTSPNLSVLRFPSPGPFRFRFPSPGPSGSQLSHSALNMEMEALNLTFVESRSRLFFQIRRSDFSKENRFLSSYDFLIRLFHNFLGMCGGPEKSKSFATPSSSAVEGSTNDTKDMKDLTVHTEDSFSCLLEFASNNDFEGFQLALDRDVSVINEVGLWYVRQIGSKQIVLEHRTPLMVAAMYGSIDVLKLILSCPEADVNFSCGTDKSTALHCAASSGSVNAVDVVKLLLSAGADNNSCMDANGNRPVDVIVVPPKLEGLKATFKIYFQIMPLMVSVDSSRSDSSAHLSLPENGLPSSPMASKFTDTDINSASEKKEYPVDPSLPDIKNSIYATDEFRMFSFKAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPEFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSAASTPNVMDMAAAMSVFPGSPSSISSVSPSPFAQPMSPSASSISHSSAWPQPNVPALHLPGSNIQTSRLRSSLNARDMAPEDLNVLQDFDGQHHLLNDLGFSLPRPGAISVCRSGRSKTLTPSNLDDLFSAEISSSPRYSDPAAASVFSPTHKSAVLNQFQQLQSSLSPINTSVSSPRNVEHPLYKLHLVMSPRSTEPISLMSTRLSAFAQREKQYLQLRSLSSRDFGVNNPVSIVGSLLTPGLIGDLLMEWKNWSVNVNELGRLQRSSSFDLRNNGEEPDLSWLAGSSPVASVDKLNFNPQVESIDQSVLGAWLEQMQLDQLVV 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00046 771 Pfam Ankyrin repeats (3 copies) 160 236 IPR002110 GO:0005515
Pste3g00046 771 ProSiteProfiles Zinc finger C3H1-type profile. 374 396 IPR000571 GO:0046872
Pste3g00046 771 Gene3D - 103 252 IPR036770 -
Pste3g00046 771 SMART c3hfinal6 404 427 IPR000571 GO:0046872
Pste3g00046 771 SMART c3hfinal6 369 395 IPR000571 GO:0046872
Pste3g00046 771 FunFam Zinc finger CCCH domain-containing protein 370 432 - -
Pste3g00046 771 SUPERFAMILY Ankyrin repeat 116 251 IPR036770 -
Pste3g00046 771 SMART ANK_2a 170 200 IPR002110 GO:0005515
Pste3g00046 771 SMART ANK_2a 205 237 IPR002110 GO:0005515
Pste3g00046 771 SMART ANK_2a 123 153 IPR002110 GO:0005515
Pste3g00046 771 MobiDBLite consensus disorder prediction 285 304 - -
Pste3g00046 771 ProSiteProfiles Ankyrin repeat region circular profile. 205 236 - -
Pste3g00046 771 Pfam CCCH-type zinc finger 374 394 IPR041367 -
Pste3g00046 771 ProSiteProfiles Ankyrin repeat profile. 205 240 IPR002110 GO:0005515
Pste3g00046 771 Gene3D - 369 432 - -
Pste3g00046 771 PANTHER UNKEMPT FAMILY MEMBER 130 731 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00046 Pste-Chr3 216368 220898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00046 86 768 C2H2 Transcription Factor Family AT5G12850 53.014 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pste3g00046 Ank_2 6.1e-10 CL0465