Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00028 ATGTCTTCTTCCTCTTCCTTCTCCCCCGCCACTCTCACTACCGAGCAAGAGCTCTCCGTGATCGTCGCCGCCCTCACCAACGTCGTCACCGGCTCCGCATCCTCTTCCTCCTCCGTCTCTCTCCCCGACTTCCGCCTCCCGCAGACCTCCCAGCCGCTCGCCGGAGCCACCATCGACCGCATAGTGCCGCCACCGAGCATGGACACGTGCCGCGAGTGCAACATCGCCGGCTGCCTCGGATGCAACTTTTTCCCTGAAGAGAAAAAGAAGCAGAAGCGCGCCAAGAAGAAGTACAGAGGCGTGAGGCAGAGACCATGGGGAAAGTGGGCCGCGGAGATTCGCGACCCCCGCCGTGCGGCCCGGGTCTGGCTCGGCACCTTCAACACCGCCGAGGAAGCCGCCCGGGCTTACGACAAGGCCGCCATCGAGTTCCGCGGCCCAAGGGCCAAGCTCAATTTCCCTCTGGTCGACGAGTCGCTGAGTTTGCAGCAGAGCGAGCCGGAACGCGTTGCAACGGAAGAGCAAATGAAAAACGAGACTCTCAACCAGGGAATGCAAATGGACGCCATCGAATTCGGCAACAAGGATACCGAATTCTGGGACAGGATTAACGAAGATCTTGATTTTCATCAACTCATGATGATGATGGATTTTGCAGGAGATTCTTCTGACTCTGCCACTGGGAACACTCTTAGTTCCTGA 702 0.5869 MSSSSSFSPATLTTEQELSVIVAALTNVVTGSASSSSSVSLPDFRLPQTSQPLAGATIDRIVPPPSMDTCRECNIAGCLGCNFFPEEKKKQKRAKKKYRGVRQRPWGKWAAEIRDPRRAARVWLGTFNTAEEAARAYDKAAIEFRGPRAKLNFPLVDESLSLQQSEPERVATEEQMKNETLNQGMQMDAIEFGNKDTEFWDRINEDLDFHQLMMMMDFAGDSSDSATGNTLSS 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00028 233 SUPERFAMILY DNA-binding domain 97 155 IPR016177 GO:0003677
Pste3g00028 233 PANTHER DNA-BINDING DOMAIN 57 172 IPR044808 GO:0003700|GO:0009873
Pste3g00028 233 Gene3D AP2/ERF domain 96 156 IPR036955 GO:0003700|GO:0006355
Pste3g00028 233 FunFam Ethylene-responsive transcription factor 2 96 155 - -
Pste3g00028 233 CDD AP2 98 154 IPR001471 GO:0003700|GO:0006355
Pste3g00028 233 ProSiteProfiles AP2/ERF domain profile. 97 154 IPR001471 GO:0003700|GO:0006355
Pste3g00028 233 PRINTS Ethylene responsive element binding protein signature 98 109 IPR001471 GO:0003700|GO:0006355
Pste3g00028 233 PRINTS Ethylene responsive element binding protein signature 120 136 IPR001471 GO:0003700|GO:0006355
Pste3g00028 233 SMART rav1_2 97 160 IPR001471 GO:0003700|GO:0006355
Pste3g00028 233 Pfam AP2 domain 97 146 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00028 Pste-Chr3 149395 150096 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00028 12 162 AP2-EREBP Transcription Factor Family AT4G34410 46.875 2.56e-37 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pste3g00028 AP2 6e-16 CL0081