LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste2g03741	CTCACAAATTCAACAACAACATATACAAGATATGGAAGATGCAAGTGTCAACCTTCCTCCTGGGTTTTTCTTCTCTCCAACAGACCAAGAACTTGTTCTTCACTTTCTCTATTGTAAGGCCTCTCTTATTCCATGCCATCCCAACATCATCCCCGATCTCGATCCGTCTCAGCTTCATCCCACGGAATTAAATGGTAAGGCGTTATTAAGTGGGAATCAATACTATTTCTTCACTAAAATTAATGAAAACCGAACCACAGAAAATGGGTATTGGAAGGAAATAGGTGACACAGAATCTATATTGTCAACCGTTGATAAGAAAGTGGGAACCAAGAAGTACTTGGTGTTCCACATTGGTGAAGCTCCACTAGGTACTGCAACCAATTGGGTAATGCAAGAATATCAAATATGTTCCTCTGGGTTTGACGCTGCTTCATATAGGAGTGCTTGGAGAAGACGAAAACATGACCAAATTTGCAGCAAGTGGGTTTTGTGCAGAGTGTATGAAAAGAGGAAGTCTGATCAACAAGGTGTAAACTGCTATAGCGATGACGATGACAGTGGATCAGAGCTTTCGTGGCTAGACGAAGTTTATTTGTCGTTGGATGATGATTTGGAAGAAATTGGCATGCCCAATTAGATTAAATGTATACTATTTCTGTATATATCTACATATGGACTTGTACAATTACAATGTCTCAGTTACGTGCATTGTTTCAAATGAACCTGTTGCATCAGACTTATGAGTCTCTTTTACATGCAGAT	765	0.3948	MEDASVNLPPGFFFSPTDQELVLHFLYCKASLIPCHPNIIPDLDPSQLHPTELNGKALLSGNQYYFFTKINENRTTENGYWKEIGDTESILSTVDKKVGTKKYLVFHIGEAPLGTATNWVMQEYQICSSGFDAASYRSAWRRRKHDQICSKWVLCRVYEKRKSDQQGVNCYSDDDDSGSELSWLDEVYLSLDDDLEEIGMPN	202

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste2g03741	202	Gene3D	NAC domain	17	165	IPR036093	GO:0003677\|GO:0006355
	Pste2g03741	202	ProSiteProfiles	NAC domain profile.	8	160	IPR003441	GO:0003677\|GO:0006355
	Pste2g03741	202	PANTHER	NAC TRANSCRIPTION FACTOR 56	8	167	-	-
	Pste2g03741	202	SUPERFAMILY	NAC domain	5	160	IPR036093	GO:0003677\|GO:0006355
	Pste2g03741	202	Pfam	No apical meristem (NAM) protein	9	125	IPR003441	GO:0003677\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste2g03741	Pste-Chr2	41672298	41673262	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste2g03741	1	165	NAC Transcription Factor Family	AT1G61110	37.430	2.06e-33	120

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NAC	Pste2g03741		NAM	5e-23	No_clan