Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g03738 CCCAACTTTTATAAATTTTCCTTTACCCCATCACTTGCAACTCATAATGGTCCATTTCTCAGTCCTCTCCCACTTACTCACACTGGCACAACACCACTTTCTAGTTTCTACCTCTTGTCATTAACTTCTGCTTTTCTTTCCATGAACGAAGCCCAAATTGAAATTACCATTCCTCACTTGTTCAGATGCCCCATCAGTTTGGACTTGTTCGAAGATCCTGTTACTTTGTGCACAGGCCAAACCTATGACAGATCAAGCATAGAGAAATGGTTTTCTTCAGGAAATCTCACATGCCCTGTTACAATGCAGAAGCTTCATGATCCATCCATTGTTCCCAACCACACTCTTCGCCACTTGATCGATCAGTGGCTCCAACTTGGTCCCCAATCTGGTAACTCCACAACTATTGATTATTTGGCTGCACTTAAGCACACCCTCGAATCGCCGGAATTGGAAAATAAGCTTCAGGCACTTGAGAAAATTAGAGTTCTCTCTGATGAGTATTGCTCCTTCAGAAAATCTTGCTTCCACCAACTGAGTTTCTTGCCCCTACTTTTGGAACTAGTTTTTGGGACTCAGCTCTCAAAATGTCACATGGACTTCACTGAGCTAGCGCTTTCTTGCATTCTAAAACTGTTGCCACTAGTGAGTTTGGAGCCTCTAAATATGATCAAAGATGAGTCTAAGTTAGCAACGTTTTTGCTATTATTTGAAAAGGGAACTAGCTCGGTTAAGACTAGTCTTTGTTGTCTTATAGATTCGACAGCAGCACCACAAACAGAACAGGTATGTCACATGCTTGGACACTCCAATAAACTAGTGCATGAGATTGTTGTACTTGCTCGCCAAGATTGTGAGGTTTCTAAGGCTGCAATTAAAGCCATGTTAGCATTATGTTCCTTGCAATCTAACAGAGAGAATTTAGTGAAGGCAGGAGCAATTGATGGGGTCATAACATACATTTCAGGTTGTGAAACAAGGCAGAAGAACTTGGCTCCATTGGCAATGGTAATAATAAAAAGACTTTTGGAGCTGGAGAGTGCTAAAGAGGCTTTGGTGAATCACCCAAATGGAATTGAAACTTTGGTGAAGATGGTTTTCAGGGTGTGTAATCAAGAGTGTAGTGAGAGTGCAGTTGGGATACTTGCAATTGTTTGTCGTGATTTTGGGCGCGCAAGAGAGGAAGCAATTGGGGCTGGAGTTTTGACTCAGTTGCTCTTTCTTCTACAGAGTCAGTGTGGCACCAAAACTAAAACAAAGGCAAGAATGCTGCTCAAGTTGCTAAGATCAAAGTGGATTGAGGATCCAAAACAAGTG 1317 0.4199 PNFYKFSFTPSLATHNGPFLSPLPLTHTGTTPLSSFYLLSLTSAFLSMNEAQIEITIPHLFRCPISLDLFEDPVTLCTGQTYDRSSIEKWFSSGNLTCPVTMQKLHDPSIVPNHTLRHLIDQWLQLGPQSGNSTTIDYLAALKHTLESPELENKLQALEKIRVLSDEYCSFRKSCFHQLSFLPLLLELVFGTQLSKCHMDFTELALSCILKLLPLVSLEPLNMIKDESKLATFLLLFEKGTSSVKTSLCCLIDSTAAPQTEQVCHMLGHSNKLVHEIVVLARQDCEVSKAAIKAMLALCSLQSNRENLVKAGAIDGVITYISGCETRQKNLAPLAMVIIKRLLELESAKEALVNHPNGIETLVKMVFRVCNQECSESAVGILAIVCRDFGRAREEAIGAGVLTQLLFLLQSQCGTKTKTKARMLLKLLRSKWIEDPKQV 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g03738 439 CDD RING-Ubox_PUB 58 105 IPR045210 -
Pste2g03738 439 FunFam RING-type E3 ubiquitin transferase 57 128 - -
Pste2g03738 439 Gene3D - 134 438 IPR011989 -
Pste2g03738 439 SUPERFAMILY ARM repeat 138 415 IPR016024 -
Pste2g03738 439 PANTHER WDSAM1 PROTEIN 54 434 IPR045185 GO:0061630
Pste2g03738 439 Pfam U-box domain 57 125 IPR003613 GO:0004842|GO:0016567
Pste2g03738 439 SMART Ubox_2 60 123 IPR003613 GO:0004842|GO:0016567
Pste2g03738 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 133 IPR013083 -
Pste2g03738 439 ProSiteProfiles U-box domain profile. 56 130 IPR003613 GO:0004842|GO:0016567
Pste2g03738 439 SUPERFAMILY RING/U-box 50 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g03738 Pste-Chr2 41536322 41537903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g03738 55 432 U-box Gene Family AT3G19380 31.172 7.84e-43 154