Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g03724 TTAATGCTATTGGTCACTAATCACTACGCTAGTCCAAACTCGCCAAAGATTGAAATCTGCGCTTCCTTCTTCCACCTTACCCCCGGTAAGAATGACCTAATAATCACTCCCAACCCTAACCCTAACCCTAACCCTCCTTTTCTGTTTCTGTGTATCATTTCTGAGATGAACTGGTTTCACTGTGCCGATGACTTTTCTTCTGAGAAAGGGATCGTCATACATCATTCGATTCCAGGCTATCGGTTTCGTCCAACTGACGTTGAGCTCATTCAGTATTTTCTGAAGAGGAAGGTTCAGGGTAAGAAAATCCCTTCCGATGTAATTACTGAACTTGACTTGTACAAGTATGCCCCGTGGGATCTCCCAGATTTGTCTCTGCTTAAGACTGGAGATTTGGACTGGTACTTCTTTTGCTCTCGGGGGAAGAAGTATTCGACTGGAGGGAGGGTGAATCGGGCCACAGAGGCTGGCTACTGGAAGACTACTGGGAAGGATAGAGCAATTGAACACATGAATAGAGTTGTGGGAATGATAAAAACACTAGTTTTTCACTCGGGTAAAGCCCCTAAGGGTGATCGAACTGATTGGGTTATGCATGAATTCAGACTTGAAGACAAGGAGCTGGCTGATAGAGGCGTTCCGCAGGACTCCTATGTAATTTGTAGGATCTTCCAAAAGGAAGGTCCTGGCCCCAGGAATGGTGCACAATATGGTAAACCATTTAAAGATGAAGACTGGGATACTGAAGAAGAGATTGATTCTGCACAACCTGCTCCTGCTGCTGCTGTGTCTGCACCTGTTCCTATAAAACCTGGTGAAATTCATATTTCTGTTGTTAATGACATCCATCCCTCTACAAGTGAATGTGTTGAATTGACCTCTTGCCGGGTATATCCTTCAGCTCCCAACAATCAAGTTGATTCTGTATCATGTGTATCAGAAATGATGCCTTCTTGCTTGGTGCATCCTTCGGCTCCAAAGAATCAAGTTGACTCTGTATCATGTGTACCGGAATTGATGCCCTCTTGCTTGACACATCCTTCAGCTCCAAATAATCAACTTGACTCTGTATCATGTGTATCAGAATTGGTGCCCTCTTACTCGGCACATCCTTCAGCTCCAAATAATCAAGTTGGCTCTATATCATGTGTATCAGAATCAGTGCCCTCTTGCTCGGCACATCCTTCAGCTCCAAACAATCAAGCTGATGATGACATTTTATCTTTGCTTGATTGTTTCAAAGATATTGACACATTGGTTGCAAATGAAAACAACGGAAAAGAGGTCTGCTGCAGTGTTTGGGGAAAGTGCATAGGTCTGCCCCCTTATCAATCAATTAAGGTTGATGACCTTGATCTGGCAAAAAATGTTCCATGTGCTCCATGTTCAGATCCAAATACAATTTTTGGGGACTTAGGAGACCTTGACAGCTTCTTTGGATTGGGTGAAGACTGTTTTTCATGTGGCCAGAAAAATGAATATCTTACAAGTAATATATTTGGGTCTTTTGACCCCCAATACTGTTTGGAATTGACGGACCTAGAGAAGCCACAGCTCTTGCATAATAAAGATGGAAGTGGTAGCCAAGAC 1590 0.4333 LMLLVTNHYASPNSPKIEICASFFHLTPGKNDLIITPNPNPNPNPPFLFLCIISEMNWFHCADDFSSEKGIVIHHSIPGYRFRPTDVELIQYFLKRKVQGKKIPSDVITELDLYKYAPWDLPDLSLLKTGDLDWYFFCSRGKKYSTGGRVNRATEAGYWKTTGKDRAIEHMNRVVGMIKTLVFHSGKAPKGDRTDWVMHEFRLEDKELADRGVPQDSYVICRIFQKEGPGPRNGAQYGKPFKDEDWDTEEEIDSAQPAPAAAVSAPVPIKPGEIHISVVNDIHPSTSECVELTSCRVYPSAPNNQVDSVSCVSEMMPSCLVHPSAPKNQVDSVSCVPELMPSCLTHPSAPNNQLDSVSCVSELVPSYSAHPSAPNNQVGSISCVSESVPSCSAHPSAPNNQADDDILSLLDCFKDIDTLVANENNGKEVCCSVWGKCIGLPPYQSIKVDDLDLAKNVPCAPCSDPNTIFGDLGDLDSFFGLGEDCFSCGQKNEYLTSNIFGSFDPQYCLELTDLEKPQLLHNKDGSGSQD 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g03724 530 SUPERFAMILY NAC domain 73 226 IPR036093 GO:0003677|GO:0006355
Pste2g03724 530 Gene3D NAC domain 85 228 IPR036093 GO:0003677|GO:0006355
Pste2g03724 530 ProSiteProfiles NAC domain profile. 76 226 IPR003441 GO:0003677|GO:0006355
Pste2g03724 530 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 77 324 - -
Pste2g03724 530 Pfam No apical meristem (NAM) protein 78 203 IPR003441 GO:0003677|GO:0006355
Pste2g03724 530 FunFam Nac domain-containing protein 86 85 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g03724 Pste-Chr2 41257706 41265659 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g03724 78 456 NAC Transcription Factor Family AT5G09330 40.979 1.37e-84 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste2g03724 NAM 4.1e-33 No_clan