Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g03708 CAACAATTTTCATTTCCCCCTCGCCACACTTCACACCATTCTCGCTCCTCCTCCTCTCCACCTCAGAAAAAAACCGTTTCTTCTGAAATTCCAATTCTGCCCTCCTGGCTTTGCGAATTTACCAATCCGCCATGGCTCCTCCAGCCACCTCGTCCTCATCGCCTTCGGCTCAGAGGCAAGTCGGCTTCAGCCGGCGCACGCAGGCACAGGAGCCGCGCCAGAATGAGGACGACGAGGACTCGCCGCCGAGGAAGTACCGGCTGATGACGGACATAATGGCGTGCGCGCGACACGCCGTGGTTGAAAGAGAGAGTTACAGTGACCTTTTATGTGACCAATGCGGCTCCGGCGAGCTGCCGGAGGAGCTGCTTCTCTGCGACAAATGCGACAAAGGCTTCCACATGAAATGCGTGAGGCCAATCGTCGTCAGGGTTCCGATTGGATCCTGGCTTTGCCCTAAGTGTCAAGGAGGGAAACGAGTGCGGACTTTCTCTCAGAAGAAGATAATTGATTTCTTCGGGATTCGGAGGACTTCTGATGGTGCTAATGACAAGCGTTCTTCTCGGGATGCTAAGAAGCGTCGGAAACGTTCGCGACCTCTTGTATTACATAAGAAAAAGAGGAGATTGTTACCATTCGTTCCTACTAAAGATACTGCCCAGAGATTGAAGCAGATGGGTTCCCTTGCTTCTGCTTTAACAGCATCAAATATGAAATTCTGTGATCATCTCACATACTTGCCTGGAATGGCTCCTAGATCTGCAAATCAAGCTACACTAGAAAACGGTGGCATGCAGACTCTTTCCAAGGAAGACATGGAGGCCCTAGAACAATGCATTGCTATGTCTAAAAGAGGCGAATTCCCTCCCTTTATGGTTGTTTATGATTCTCGTGAAGGTTATACTGTTGAGGCTGATGACCTGATCAAGGATATGACAATTATTGCTGAATACACTGGCGATGTAGATTACCTTGACAACCGGGAAAATGATGATTGTGACAGTATGATGACCCTTCTTCTTGGATCAGAAAAAACTCAAAATCTTGTTATCTGTGCTGATAAACGTGGAAACATTGCTCGCTTTATCAGTGGCATAAACAATCATACACAGGAAGGTAGGAAAAAGCAGAACTGTAAATGTGTGAGATACAATGTTGATGGTGAATGCAGGGTCTTTTTGGTTGCTACACGTGATATTAATAAGGGAGAAAGGCTTTATTATGATTATAATGGTCATGAGTATCAATACCCGACTCATCATTTTGTTTGAGTGAAAGGCATAAATACCTCCTAAAAATTCTATAGAACTGGGACACAATTTTAGATCCTCGGGAAAGGATTTTATTCATATTGTTGAAAATTTCAACTCATTGTTGTTGCAGATTCAACAATTTTTTCTTAAATTATCATCATGGGCAATTCACTGTAATTTATGCTGTAGAGCTGCCCAATCATGTGGCTTAGGGTAGAATAGAGTACCTTAGGAAAACTTTATTCATTTAGGTTATATCTCAGAAGATGAGATATACATTTTTT 1537 0.4411 MAPPATSSSSPSAQRQVGFSRRTQAQEPRQNEDDEDSPPRKYRLMTDIMACARHAVVERESYSDLLCDQCGSGELPEELLLCDKCDKGFHMKCVRPIVVRVPIGSWLCPKCQGGKRVRTFSQKKIIDFFGIRRTSDGANDKRSSRDAKKRRKRSRPLVLHKKKRRLLPFVPTKDTAQRLKQMGSLASALTASNMKFCDHLTYLPGMAPRSANQATLENGGMQTLSKEDMEALEQCIAMSKRGEFPPFMVVYDSREGYTVEADDLIKDMTIIAEYTGDVDYLDNRENDDCDSMMTLLLGSEKTQNLVICADKRGNIARFISGINNHTQEGRKKQNCKCVRYNVDGECRVFLVATRDINKGERLYYDYNGHEYQYPTHHFV 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g03708 379 CDD SET_ATXR5_6-like 242 379 - -
Pste2g03708 379 SMART set_7 246 373 IPR001214 GO:0005515
Pste2g03708 379 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 142 377 - -
Pste2g03708 379 FunFam Histone-lysine N-methyltransferase ATXR5 150 379 - -
Pste2g03708 379 ProSiteProfiles SET domain profile. 245 367 IPR001214 GO:0005515
Pste2g03708 379 Pfam PHD-finger 67 112 IPR019787 -
Pste2g03708 379 MobiDBLite consensus disorder prediction 26 40 - -
Pste2g03708 379 CDD PHD_RSF1 66 111 - -
Pste2g03708 379 Pfam SET domain 243 367 IPR001214 GO:0005515
Pste2g03708 379 SUPERFAMILY FYVE/PHD zinc finger 52 112 IPR011011 -
Pste2g03708 379 Gene3D SET domain 150 379 IPR046341 -
Pste2g03708 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 125 IPR013083 -
Pste2g03708 379 SMART PHD_3 66 112 IPR001965 -
Pste2g03708 379 MobiDBLite consensus disorder prediction 136 157 - -
Pste2g03708 379 ProSitePatterns Zinc finger PHD-type signature. 67 111 IPR019786 -
Pste2g03708 379 SUPERFAMILY SET domain 239 370 IPR046341 -
Pste2g03708 379 ProSiteProfiles Zinc finger PHD-type profile. 64 114 IPR019787 -
Pste2g03708 379 MobiDBLite consensus disorder prediction 1 25 - -
Pste2g03708 379 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g03708 Pste-Chr2 40793422 40797759 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g03708 30 136 C2H2 Transcription Factor Family AT3G01460 32.520 1.18e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pste2g03708 SET 2.7e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g03708 2 40793422 40797759 Pste2g03708 2 40793422 40797759 ECH