LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste2g03702	ATGAGTTTGATGCAAACAGAAAGTTCAGAGGAGGGTGCAGGCCTTCTGGAGCCTCCTGATCCCAATGTTATTGAAATTGATCCTACCAATCGCTACGTTAAGTATAAAGACATAATCGGCCAAGGAGCTTTCAAGACTGTTTACAAGGCATTTGATGAAATCAATGGACTCGAAGTTGCATGGAGCCAAGTTCAGATTGATGAGGTATTACATACCCCCGGCGGTTTAGAGAGGCTCTACTCTGAAGTTCATCTCTTGAAGTCACTCAAGCATGATAGCATAGTAATGTTCTATAATTCCTGGATTGATGACAAGCATAGGACTCTTAACTTGATTACCGAGTTGTTCACCTCTGGGAGCCTCAGACAGTACAGTAAGAAACACAGGAAGGTTGACATGAAGGCTATTAAAGGATGGGCAAGGCAGATTTTAATGGGTTTAAACTATCTCCACAGTCACAACCCACCTATTATACATAGGGACCTGAAGTGTGATAATATATTTATTAATGGTCACCGAGGAGAAGTTAAAATTGGAGATCTAGGGTTGGCGACTCTGTTGAAGCAGACTAATGCCAAGAGTGTAATTGGTATTTATATTTACACATATGTAATCCTACTAGGAACCCCCGAGTTTATGGCACCTGAACTGTATGATGAACAGTATAATGAATTAGCCGACATATATTCTTTCGGGATGTGCATGCTTGAGTTGGTTACGGCTGAATATCCTTACAGTGAATGTAGAAACTCTGCTCAGATATACAAGAAAGTTTCATCTGGCATAAAGCCTGTTGCCCTTTCCAAACTCAAAGATTCAGAAGTAAAAACATTTATTGAGAAATGTCTTGTCCCGGCATCTCAAAGATTGTCAGCAAAGGAGCTTCTGAAGGACCAGTTTCTGCAAGTGAATGGTTCAATGAAGAACCGTCGGCTCCCATTACCAGATATTGTTCTTCCAAAATATGGAGCCTTTGAAAATCGTTGTCTGATGTCAGAAGGCCCGGCTAGTACACGTATTAGATCCATTTCAATGGATCTTGGTGATGCCACTGAGCTGCCATTGACAACTTTACTTTATAATTCTGTTAATTCTATTGATGATGTATTGCCTTCCCCGTGTGTTGAGATACGAAGGTTGAAGGAAGGTGACATCTTTTTTCTAAAAGGTGAACAAAATGATGAGAAGTCTGTATCTTTAGTTCTCCGAATAGCTGATCAGAGTGGGCGGGCAAGAAATATCCATTTTATATTCTACATCAACAGTGATACTGCCATATCAGTTTCAAGTGAAATGGTTGATCAACTAGAACTTGCTGAGCAAAATGTGAAATTCATAGCGGAATTAATTGACCTGTTGTTGATAACGTTGCTTCCAGATTGGAAACCTTGTGTAGCAATCGACCATTTAGTTTCTACTAATGGTAAAGTAACTCATATGAGCCAACAGAAAGACTTAGAGTTTGCAAAATACAAACAAATGTCAAAACATTCCAGCCGAAGTATGTATGAAGATGTGGGTCTCTCAACCTCACCTGCAAGATCAGCAGAAAAGGAAAACAATGATGATATGATTTTGGACAAGGTACTGTCTCACGCAAGCGTTGGTCTTCAAAGAGCAATAAAGACAGATGATACGTATTCAGAGATGTCATACACTTCCACATCTGAGTTCAATGATAAGCATTTTTCTACAGTTTCATTCATGTCTGCTAAATCAGGATTTACAGACTTTGACTTGCCTAAAGTTAATAGTCAAAGCTCACTTGCATCTGAATTCGGGGCATCATCTGATTATAGGACTTATCCGTGCATGGAAAGCAATGGTACGATGAAATTCTCTAATTATGGCAACAGTTCTTCCTCCTTGTATGGACATGAGGATGACTTGAGAATAGAGATAGAGATGATTGACCAGCAATATGAAGAGGCAATTAAAGATGTAACAAGAAAAAAATACAAGGCCATCATGGAGGCTACAAAGAGGCACGCACAAAAAACCGCAAGCATAAAATAA	2016	0.3948	MSLMQTESSEEGAGLLEPPDPNVIEIDPTNRYVKYKDIIGQGAFKTVYKAFDEINGLEVAWSQVQIDEVLHTPGGLERLYSEVHLLKSLKHDSIVMFYNSWIDDKHRTLNLITELFTSGSLRQYSKKHRKVDMKAIKGWARQILMGLNYLHSHNPPIIHRDLKCDNIFINGHRGEVKIGDLGLATLLKQTNAKSVIGIYIYTYVILLGTPEFMAPELYDEQYNELADIYSFGMCMLELVTAEYPYSECRNSAQIYKKVSSGIKPVALSKLKDSEVKTFIEKCLVPASQRLSAKELLKDQFLQVNGSMKNRRLPLPDIVLPKYGAFENRCLMSEGPASTRIRSISMDLGDATELPLTTLLYNSVNSIDDVLPSPCVEIRRLKEGDIFFLKGEQNDEKSVSLVLRIADQSGRARNIHFIFYINSDTAISVSSEMVDQLELAEQNVKFIAELIDLLLITLLPDWKPCVAIDHLVSTNGKVTHMSQQKDLEFAKYKQMSKHSSRSMYEDVGLSTSPARSAEKENNDDMILDKVLSHASVGLQRAIKTDDTYSEMSYTSTSEFNDKHFSTVSFMSAKSGFTDFDLPKVNSQSSLASEFGASSDYRTYPCMESNGTMKFSNYGNSSSSLYGHEDDLRIEIEMIDQQYEEAIKDVTRKKYKAIMEATKRHAQKTASIK	671

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pste2g03702	671	SUPERFAMILY	Protein kinase-like (PK-like)	35	302	IPR011009	-
Pste2g03702	671	Pfam	Protein kinase domain	36	301	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Pste2g03702	671	CDD	STKc_WNK	31	301	-	-
Pste2g03702	671	Gene3D	Phosphorylase Kinase; domain 1	19	114	-	-
Pste2g03702	671	FunFam	Serine/threonine-protein kinase WNK8	396	493	-	-
Pste2g03702	671	PANTHER	SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED	22	654	-	-
Pste2g03702	671	MobiDBLite	consensus disorder prediction	1	21	-	-
Pste2g03702	671	Coils	Coil	627	647	-	-
Pste2g03702	671	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	157	169	IPR008271	GO:0004672\|GO:0006468
Pste2g03702	671	Gene3D	Transferase(Phosphotransferase) domain 1	116	308	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste2g03702	Pste-Chr2	40544681	40547497	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste2g03702	133	471	MAP Kinase Kinase Kinase	AT1G49160	66.667	1.21e-163	475

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	WNK_NRBP	Pste2g03702		Pkinase	7.5e-50	CL0016

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste2g03702	2	40544681	40547497	Pste2g03702	2	40544681	40547497	ECH
	Pste3g01626	3	10251810	10255146	Pste2g03702	2	40544681	40547497	PCT

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