LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste2g03682	AGCGAAAGTGCAGGGTTTAGCGTGAATTCTAAAACCCTCTTCCGTTTGGTAGAGTAGATGGGGTAAGTAAAGGTTGCTAACTATCGCTTGGGTTCCACATTGGTGATCGTGCGATGAGGCCTCTTTTCAGAAGGAAGCAGTTGTTGGCGGTGCGTATTGGGTTTCAGGCGCGTGAGGTGTCGTGTGGTTGTTATGGGCATCATGAGTTGGAGGAGACGCGCCGAAACGTGAAGGTATCGGTGTGGTGGGATTTTGAGAACTGCCAGGTGCCAGCGGGGGTTGATGCGTTGGGTGTGGCGCCGGCAATAACGAATGCAGTGAGAGCGAAAGGGATTAAGGGACCTCTTCGAATCAGCGCTTTCGGTGATGTTCTCCAGCTCTCCAAAGCCAACCACCAGGCACTTTCTGACACCGGCATTCACTTCACCCACACTCCTGGTGGAAAGAACAGTGCTGATAGATGTCTTCTAGTCGATCTTATGGATTGGGTTTCTCAAAATCCTCCACCTGCACATCTCTTTTTAATATCTTCTGATGGAGACTTTGCGAGCGTATTACACTGGTTAAGAATGAATAATTACAATATATTGCTTGCTAGCAAGGTTCATGCTCCTGATGTTCTCTGCAGTGCGGCAACTACAATATGGCAATGGCCTTCATTAGTAAAGGGGGAATATAAGGAGATTTTTGAAAAACCATTCTCAGCTGTTGAGAAGTCTACATCTTCACAAAAAGGAGATATATATGAACCTTCCTCATATTTACATACTGTTCCAGAAGCAGTTGTAAGACAGATTTGGCATATATTGACATCACATCCAAAAGGAATCTCAATTGGACAACTTCGTGAAGAGTTGAAGAAACGTAATGTGCATTTTGGTAAAAGCTTTTATGGATATGGAACGTTTTCTCGCTTTCTATCATCAACACCAAATGTGAAGCTAGAGAATTTAGGTGAAGGTTATTTTTGCGTATATCTGGTCTCCTCAAAACTCCCCAAACCATTTGAGAGCAATGCTGTAGAATCCGTAACATCTTGTATTAAGATTGATGAGAGGGGATCTGCAGCAACTCCAAAGCTAAATGGTGATGATAAAAATAACGCTAGAGAAGCAAATGAAACACCCTTAAGTGCCTCGTCTCATGAAAGGAGTATGGGTGATGATTCAAAATCATTCCAATTGGTCAATTCACAAGTCAAACTCATGGGAGAATATGTATATGCTAAACCTTCAATTTCATTGGTTGAAAGACATGTATCTCAAACCCCAGATGAGTTGCAGAAATCTTCACTCTGTAGTGTGGAGGTTGTAGGTATGACTACTGGACAACTGTCAAAGATTCAACCACTACTCAAGGACAACCAACTTTCCGAAACCAACCCAGATTCCTTTAAAATGAGTTCTAAAAGCTCATCTGATGATGACATTGTTAGCTCTGAGGATCCAAGTCATAAAATTCAGGAAAAATACATGACTTCAAGGAATCACTGTGCTGGAAATGATCAGACAGTGGTGGAGGATGTTGGTACTGCAAACAATGAATCTGGAAATTTTAAAGCAACAGACAAATATGATATTCTGACTAGAAAGGAGGTTGATGATGTTTGTCACAGCCAATATTCTCTTCCAGTTGATGACTCGATGGTTGATAAAGAAACTGGAGGAAGTGATGAAACTTATAGGAAGGGTTCATCATTCTATGAATGGATCAAAAGCTGGTTGCAATTTTGGAAAGGCAATGCAAAATCTGATGATTCGACTGCTCATCCGAGCAAGGTGGTTAGTCATTTTGTGGATTCTAACTCATCTGAACTAGCAGCAAACCTGACAGTCCAGATTGTTAGTGATTTTGAAGAACCCAAGTTATCAGGACTGGACCAGAATGTTATTTGTTCCGGAAAACCTGAGTTGTTTGCTACAAGTTCGTTTTGGAATAACGTGGAATCTTTTATTTTCACGCTCAAAGGATCACATATTGTTTCCCAGTCAAAAAACAGGGAGGACATTGCACATAAATTACGAAAGGAAGGACCCCCAATTTTTAGACTTCTCACTGAAAAAGAAATTCTTCAATTGGTGGAGTTATCAATATCAGAGAAGAAGTGGTTGGAGGAAATCCCCTCCCAAACATTCCCTTTTAGGCTAACTCAACCAGTTCTTAACAAGAACTCATTGATGGGCGAAGCTCATGGTGCAAATGGCTTGAGATCTCTGTTTCTGAGAAGAGCATCAGAGTCCACGTTGCAAAAATCATTTGAACATGATGTGGAGAAGCACAATCGGAGTATTCCTTATACTGGTGTTTCTGCGACTGCTAATGAGATGAAATCTACAAAGAGGTCTAGAAATGAAACATTAGAAGATTGTCAGAAACTTGTGAGTGAGATATTAAGGGAACACCCAGAGGGTTGTAGTATCAGTTCTTTCCCAAGACTATTTGTTGATAGGTATGGCTATCGTCTTGATTTAAATAAGCTTGGTTACCAAAAGTTGGCAAACTTACTACAGATGATACCGGAAGTTAAAGTAGAGTCTGCTTATATTTATCCTTGTATTCGTGCTGTTAGAGCTTATGAAGGGGAAACTTTTAATCTCTATACTAATGCCTGTCATGCTAACGGACTCTTGAATTCAGATGGTGAATTATCAGATTCTGCCTCGAAAGACAATAACATGGAATCTCCATGGGAGGAATTAGGTCCCGATACTGCCAACTATTCCAATCAGAGTAGCCTGGAGTCAGAATTAAGTCGGAAAGCCAAAGAATTGGATACTTCAAAGTGTCCTGATTATGAACCTATAGTCTTACAATATGTTTCTTCTAAATCTGAAGGAGATAGCGATTCTAGAGATCACCCAGAAGAACGAGGAAAACCAAAATGCAATGAACAAGACAGTTATTTTTGTCAAGCTCTGGAGTTGTTAAACAGCAGGGAGAAAGGAGAGAAGTGTTAA	2957	0.4078	MRPLFRRKQLLAVRIGFQAREVSCGCYGHHELEETRRNVKVSVWWDFENCQVPAGVDALGVAPAITNAVRAKGIKGPLRISAFGDVLQLSKANHQALSDTGIHFTHTPGGKNSADRCLLVDLMDWVSQNPPPAHLFLISSDGDFASVLHWLRMNNYNILLASKVHAPDVLCSAATTIWQWPSLVKGEYKEIFEKPFSAVEKSTSSQKGDIYEPSSYLHTVPEAVVRQIWHILTSHPKGISIGQLREELKKRNVHFGKSFYGYGTFSRFLSSTPNVKLENLGEGYFCVYLVSSKLPKPFESNAVESVTSCIKIDERGSAATPKLNGDDKNNAREANETPLSASSHERSMGDDSKSFQLVNSQVKLMGEYVYAKPSISLVERHVSQTPDELQKSSLCSVEVVGMTTGQLSKIQPLLKDNQLSETNPDSFKMSSKSSSDDDIVSSEDPSHKIQEKYMTSRNHCAGNDQTVVEDVGTANNESGNFKATDKYDILTRKEVDDVCHSQYSLPVDDSMVDKETGGSDETYRKGSSFYEWIKSWLQFWKGNAKSDDSTAHPSKVVSHFVDSNSSELAANLTVQIVSDFEEPKLSGLDQNVICSGKPELFATSSFWNNVESFIFTLKGSHIVSQSKNREDIAHKLRKEGPPIFRLLTEKEILQLVELSISEKKWLEEIPSQTFPFRLTQPVLNKNSLMGEAHGANGLRSLFLRRASESTLQKSFEHDVEKHNRSIPYTGVSATANEMKSTKRSRNETLEDCQKLVSEILREHPEGCSISSFPRLFVDRYGYRLDLNKLGYQKLANLLQMIPEVKVESAYIYPCIRAVRAYEGETFNLYTNACHANGLLNSDGELSDSASKDNNMESPWEELGPDTANYSNQSSLESELSRKAKELDTSKCPDYEPIVLQYVSSKSEGDSDSRDHPEERGKPKCNEQDSYFCQALELLNSREKGEKC	947

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste2g03682	947	Pfam	OST-HTH Associated domain	623	668	IPR025677	-
	Pste2g03682	947	CDD	LOTUS	221	289	-	-
	Pste2g03682	947	PANTHER	LIMKAIN B LKAP	31	759	IPR024768	GO:0005777\|GO:0010468
	Pste2g03682	947	CDD	LOTUS	749	806	-	-
	Pste2g03682	947	Pfam	NYN domain	40	175	IPR021139	GO:0004540
	Pste2g03682	947	MobiDBLite	consensus disorder prediction	318	353	-	-
	Pste2g03682	947	CDD	PIN_limkain_b1_N_like	40	162	-	-
	Pste2g03682	947	ProSiteProfiles	OST-type HTH domain profile.	748	822	IPR025605	-
	Pste2g03682	947	MobiDBLite	consensus disorder prediction	417	444	-	-
	Pste2g03682	947	Gene3D	-	743	811	IPR041966	-
	Pste2g03682	947	ProSiteProfiles	OST-type HTH domain profile.	220	291	IPR025605	-
	Pste2g03682	947	Gene3D	-	218	294	IPR041966	-
	Pste2g03682	947	MobiDBLite	consensus disorder prediction	844	888	-	-
	Pste2g03682	947	MobiDBLite	consensus disorder prediction	901	925	-	-
	Pste2g03682	947	MobiDBLite	consensus disorder prediction	417	436	-	-
	Pste2g03682	947	Gene3D	-	32	180	-	-
	Pste2g03682	947	MobiDBLite	consensus disorder prediction	907	925	-	-
	Pste2g03682	947	Pfam	OST-HTH/LOTUS domain	749	807	IPR025605	-
	Pste2g03682	947	Pfam	OST-HTH/LOTUS domain	222	283	IPR025605	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste2g03682	Pste-Chr2	40223409	40232195	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste2g03682	39	202	C2H2 Transcription Factor Family	AT5G61190	43.030	2.83e-34	140

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste2g03682	2	40223409	40232195	Pste2g03682	2	40223409	40232195	ECH