Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g03676 CGTGAAGATAGAGACCGGGACCGACATAGGAGTAGCAGAGACAGAGACCGAGACAGAGATGGTGAGAGAAGTAGCAGAGATAGGGATAGGGATAGGGATAGGGATAGGGACAGAGACAGAGACAGGGAAAAGGACAGAGACAAAGAGAGAGATCGGAGGGACAGGGATAAAGAGAGGGAAAAGAGGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAAAGAGACAGAAAGGATAAAGAACGGGAGGAGAGAGAGAGGTCTCGCAGGAGCAGGAGTCGTTCTGAGCGAGAGCGAGATAGAGATAGAGATAGAGAAAGAGAAAGAGAACGGGATTTCGAAACAAGAGATACCAGGAGATTTAGGGACAAGAAAGAGGCAGCGGAGCCCGAGGCAGATCCAGAAAGGGATCAGAGAACTGTTTTTGCTTACCAGATGCCCTTAAAGGCATCAGAGAGGGATGTTTACGAGTTCTTCTCAAAAGCTGGCAAGGTGAGGGATGTCCGTCTAATTATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTATATTGAATTCTATGATGCAATGTCAGTTCCAATGGCAATTGCTCTCTCTGGCCAACTTCTTCTAGGACAACCTGTAATGGTCAAACCTTCTGAGGCTGAAAAGAACCTTGTCCAATCTAATGCTACTAGTGGAGCTGCTGGGGTAGTTGGACCATATGGAGCTGTGGACAGGAAACTGTATATATTTGAGCCATTTGGTCCGGTGGAGCTTGTACAGCTGCCTCTTGACTTGGAGACAGGACATTGCAAGGGCTTTGGGTTTGTTCAATTTGCTCATCTAGAGCATGCCAAGGCTGCTCAGAGTTTAAATGGAAAATTGGAAATTGCTGGCAGGACTATAAAGGTTTCATCTGTAACAGATCATGTTGGAAACCAAGATACAACCGCAAAATCTGCAGACTTTGATGATGATGAAGGTGGATTGGCTTTAAATGCCCAGTCAAGAGCATTGCTTATGCAAAAGCTGGACCGCTCTGGCATTGCTGCAAGCATTGGTTTGCCTATTGTGAATGGGTCAGCTCCTGCTCAACAGGCTATTATGCCTATTGGTAATCCAGGTATTATACCAGCACCAACTGTCCCAACCCAAATTATGCCTACCCCAGTGACTGAACCTGTTGGAAACCCCAGTGAGTGTTTACTGTTGAAGAATATGTTTGATCCAAACACTGAGACGGAACCAGATTTTGATCTAGATATTAAAGAGGATGTAGAAGAAGAGTGTTCAAAATATGGACGGGTGAAGCATATCTATGTTGACAAAAGAAGTGCAGGTTTTGTGTATTTGCAGTTTGAAACTGTGGAAGCAGCAAGTGCTGCTCAACGTGCGATGCACACAAGGTGGTTTGCAGGCAGAATGATTTCTGCTATCTTCATGCAACCTCAGATATATGAAGCTAAGTTTAAAGGGGGTGCTTGAAGCAGTGCTTACGGACCTTGTGGCTCAGAGACGACAGTCTGCATATTTTTCTCACATTAGTTTTCAGAAATTGAGTTTAGTTTATTAATTTTGATTCATGATTTGTTCTATTAGATGTACTGTTACAGAAATTTTACTGTCCAGTAATTTATTTTCATATCAATGTATTCTATTTTAACGGAGTCGTTTATCTTGTTTCCTTTTGATTATTTACTACTTACTACCACTAGATTAATGATGAGAGTGCTATTGTTGACTGTTTTTAGCAGTATGTATTGATAGTGGAATAGACGTTTAC 1777 0.4311 REDRDRDRHRSSRDRDRDRDGERSSRDRDRDRDRDRDRDRDREKDRDKERDRRDRDKEREKREKEKEKEKEKEKEKERDRKDKEREERERSRRSRSRSERERDRDRDRERERERDFETRDTRRFRDKKEAAEPEADPERDQRTVFAYQMPLKASERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNATSGAAGVVGPYGAVDRKLYIFEPFGPVELVQLPLDLETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGNQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGLPIVNGSAPAQQAIMPIGNPGIIPAPTVPTQIMPTPVTEPVGNPSECLLLKNMFDPNTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKRSAGFVYLQFETVEAASAAQRAMHTRWFAGRMISAIFMQPQIYEAKFKGGA 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g03676 492 SUPERFAMILY RNA-binding domain, RBD 395 479 IPR035979 GO:0003676
Pste2g03676 492 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 248 307 IPR000504 GO:0003723
Pste2g03676 492 Gene3D - 135 228 IPR012677 -
Pste2g03676 492 FunFam Splicing factor CC1-like 63 227 - -
Pste2g03676 492 Gene3D - 394 490 IPR012677 -
Pste2g03676 492 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 4 488 IPR006509 GO:0003723|GO:0005634|GO:0006397
Pste2g03676 492 MobiDBLite consensus disorder prediction 1 142 - -
Pste2g03676 492 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 142 219 IPR000504 GO:0003723
Pste2g03676 492 SMART rrm2_1 404 477 IPR003954 GO:0003676
Pste2g03676 492 SMART rrm1_1 143 215 IPR000504 GO:0003723
Pste2g03676 492 SMART rrm1_1 399 477 IPR000504 GO:0003723
Pste2g03676 492 SMART rrm1_1 232 303 IPR000504 GO:0003723
Pste2g03676 492 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 322 416 IPR029123 -
Pste2g03676 492 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 150 211 IPR000504 GO:0003723
Pste2g03676 492 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 421 474 IPR000504 GO:0003723
Pste2g03676 492 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 248 301 IPR000504 GO:0003723
Pste2g03676 492 Gene3D - 244 321 IPR012677 -
Pste2g03676 492 FunFam Splicing factor, CC1-like protein 393 492 - -
Pste2g03676 492 CDD RRM1_RBM39_like 143 215 - -
Pste2g03676 492 MobiDBLite consensus disorder prediction 1 141 - -
Pste2g03676 492 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 403 481 IPR000504 GO:0003723
Pste2g03676 492 Coils Coil 48 101 - -
Pste2g03676 492 CDD RRM3_RBM39_like 397 479 - -
Pste2g03676 492 SUPERFAMILY RNA-binding domain, RBD 139 305 IPR035979 GO:0003676
Pste2g03676 492 NCBIfam splicing factor, CC1-like family 33 488 IPR006509 GO:0003723|GO:0005634|GO:0006397
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g03676 Pste-Chr2 40067890 40079297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g03676 143 293 Eukaryotic Initiation Factors Gene Family AT4G34110 29.677 5.95e-09 56.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g01681 3 10650814 10657353 Pste2g03676 2 40067890 40079297 ECH
Pste2g03676 2 40067890 40079297 Pste2g03676 2 40067890 40079297 ECH
Pste3g01681 3 10650814 10657353 Pste2g03676 2 40067890 40079297 PCT