Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pste2g03632 | CGCGGAAAGGAAATACCCCTCCAATGTTGGCCTTCTCCAAGTTGAGGAAAGCATCCTGCGTGTTCCACCCAAAGCAGAAGGCTCCAACATTCCTCCGAAGATTCTCCGTTCCGTCCGAGGAACCTGTCTCTTCGAATCCCCAACTGCCTCTTCGTTTCTGCATCTGGGTCGCCCTCAAGTTCGGGAATTTTTCCGACCAAGATCACTGCAACTCGGTCAGTAACGTCTTTTCCACCTACAACTTGTTTTCCCTTTACTGGGAGGCTCTCGAGCTTCTTAAGAAATCTGGGGTTTTGGTAACTTCTGATTCCTTCAGGGCCTTGATCAGGGCCTATTGGCAAAAGGGTCTCGCCGACAAGGCTATAGAATCATTTGGTAGAATGAATGAGTTTGATTGCAAGCCCGATGCTCATGCCTTTAACACCATTTTGAGCATTGCGTTGAAGAAACAGTTGGTTGTGCTGGCTTTTGCTGTGTATAATTTGATGCTTAAGTCCAATTGTTATCCTGATAACTACACTTATGGCATGTTGATTGCTGGCTTTTGTAAAAGTGATAATATTAAGGGTGCGCTTGAGATGCTCGATGAAATGAGCCAAAGGGGTATAGAGACTTCTCCGGTAACAATTTCTGCTATTGTTTCTGGTCTCTGTCGTGCGAAGAGGGTTGATGAGGCAAATAGGTTTTTTAACGTGATGAAAGAAAGGCACCAGCCTGATTTGGTATCTTATAGTGTTTTGATTAGTGGGTATTGCAAGTTGGGGAGGTTAGTAGAAGCCGTTTCCTCTCTTACATTGTTAGAGAGAGACGGTTTGGCCCTTGGATTGAAGGGCTATAGTTCTCTGATTGCTGGCTTTTTTAGTGCAAGAAGATACAATGAAGCACATTCGTGGTATGGAAGGGTGTTTAAGAAGGGTATTGTGCCGGATGTTGTTTTCTATACCATTATGATACGAGGTTTGTCCAGCGAAGGCAGGGTTGGTGAAGCTGTCAAGATGTTAGGTGAGATGACCCAGAGAGACTTAGTTCCTGATGCTGTTTGTTACAATGAAATTATTAAAGGTCTCTGTGACGCTGGTATGTTGGATCGAGCACGATCATTACAACTTGAGATTTCTGAGCATGAAGGGTTTCATAATGTTTGCACACATACCATTCTCATCAGTGAAATGTGTAAGAAAGGAATGGTTGACAATTCACAGGAAATATTTAATCAGATGGAGAAGCTTGGATGTTTTCCTTCAGTTGTGACCTTCAATGCTCTTATGGATGGACTGTGCAAGGCTGGTAAACTTGAGGAGGCACACCTTTTATTGTACAAGATGGAGATTGGAAGAAGTCCTTCATTATTCTTCCGGCTTTCTCAGGGTTCTGATCAGGTTTTAGATAGTGTTGCTCTCCAGAAAAAGATAGAGCAAATGTGTGAGGCTGGGCAAATTTTTGATGCATACAAGTTTCTCAATCAACTTGCTGACAGTGGGGTTATGCCTGACATTTTGACATACAACATTCTAATCAACGGCTTTTGCAAGGCTTCTAAGATCAATGGTGCTTTAAAGCTTTTCAAGGATATGCAAAACAAGGGGATCTCACCTGACTCTGTTACATATGGGACACTTATTGATGGGCTTTTCAGGGTTGACAGAGAAGAGGATGCCTTTAAGATTCATGAGCATATGTTGAATCATGGGTGTGAACCTAGCTCTGAAGTTTGTAGAGCACTTATGACTTGGTTGTGTCGAAAGAAGAAGGTCTCACAGGCCTTCAGTTTTTATTTGGAATATTTGAAGAACCTTGGTGGCAGGGAAGATGATTCAATCAATGTTCTGTTGGAACATTTTGTCAGAGGCGAAGTAGAGCAGGCAATTCGAGGTTTACTAGAACTGGACTTTGGGTTTGGAGATTTTAATCGATCTCCATATACAATTCTACTTATTGGATTTTGTCAGGCAGAAAAGATAGACGAAGCATTAATTATGTTTTCTGTTCTTGATAAGTTCAATATCAATATCAATCCTGCAAGTTGTGTACATTTGATCAAAGGTCTCTGTGCAAGAGGAAGGCTGGATGATGCGGTAAATATCTTCCGTTATACTCTTGACAAAGGTTTCAAGTTGATCAACTTAGTAGCAGTTAGTAAGCTGCTCCGCAAGTGTCTTATTCTTTCCCAAGATAAAAAGGAATATGCTATTGATCTTGTTAATAGGATGGAGTCTACTGGATATCGTTTAAATAAGTTGTTGAAAAATACAGAGCAGGGCAAATATTCTGTGTGCTTGTCATCATGTGCTGTATGCCCTTCATTTCAGGCATTTTTTGGGCTTCAATACATTTCTTCCTACATGTCTAAGAGCATTTCGGCAAACATAGACAAGGAAGAGGGAAAGAAGACTGCCGTTGTTCATATGGGTCTTCTTTGGTATGTCTCTCAAAACTCATTTCCCACAAAGATGGATAGGGATAGACACAAGGGCTTCCACAGAACATGCACAGATGTCAAGTATTTGATGGTTACGATGGAAACTCTTCGTATTCTTGTTTCCATTAATAATCCGCTTACTTGGCCTTGGATAATGGATATTTGGAACCAAATGTTATTGACAAATACAGAGATGGCTATAAGACTTTTGGGCTCAGTCAGAGTTGTGGTCGATTTGCTGTCTCAGTCTCAGGATTACTTTGTGAAAACTCAA | 2693 | 0.414 | MLAFSKLRKASCVFHPKQKAPTFLRRFSVPSEEPVSSNPQLPLRFCIWVALKFGNFSDQDHCNSVSNVFSTYNLFSLYWEALELLKKSGVLVTSDSFRALIRAYWQKGLADKAIESFGRMNEFDCKPDAHAFNTILSIALKKQLVVLAFAVYNLMLKSNCYPDNYTYGMLIAGFCKSDNIKGALEMLDEMSQRGIETSPVTISAIVSGLCRAKRVDEANRFFNVMKERHQPDLVSYSVLISGYCKLGRLVEAVSSLTLLERDGLALGLKGYSSLIAGFFSARRYNEAHSWYGRVFKKGIVPDVVFYTIMIRGLSSEGRVGEAVKMLGEMTQRDLVPDAVCYNEIIKGLCDAGMLDRARSLQLEISEHEGFHNVCTHTILISEMCKKGMVDNSQEIFNQMEKLGCFPSVVTFNALMDGLCKAGKLEEAHLLLYKMEIGRSPSLFFRLSQGSDQVLDSVALQKKIEQMCEAGQIFDAYKFLNQLADSGVMPDILTYNILINGFCKASKINGALKLFKDMQNKGISPDSVTYGTLIDGLFRVDREEDAFKIHEHMLNHGCEPSSEVCRALMTWLCRKKKVSQAFSFYLEYLKNLGGREDDSINVLLEHFVRGEVEQAIRGLLELDFGFGDFNRSPYTILLIGFCQAEKIDEALIMFSVLDKFNININPASCVHLIKGLCARGRLDDAVNIFRYTLDKGFKLINLVAVSKLLRKCLILSQDKKEYAIDLVNRMESTGYRLNKLLKNTEQGKYSVCLSSCAVCPSFQAFFGLQYISSYMSKSISANIDKEEGKKTAVVHMGLLWYVSQNSFPTKMDRDRHKGFHRTCTDVKYLMVTMETLRILVSINNPLTWPWIMDIWNQMLLTNTEMAIRLLGSVRVVVDLLSQSQDYFVKTQ | 890 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pste2g03632 | 890 | Gene3D | Tetratricopeptide repeat domain | 366 | 436 | IPR011990 | GO:0005515 | |
| Pste2g03632 | 890 | Gene3D | Tetratricopeptide repeat domain | 296 | 365 | IPR011990 | GO:0005515 | |
| Pste2g03632 | 890 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 337 | 367 | IPR002885 | - | |
| Pste2g03632 | 890 | Gene3D | Tetratricopeptide repeat domain | 47 | 179 | IPR011990 | GO:0005515 | |
| Pste2g03632 | 890 | Gene3D | Tetratricopeptide repeat domain | 438 | 590 | IPR011990 | GO:0005515 | |
| Pste2g03632 | 890 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 664 | 698 | IPR002885 | - | |
| Pste2g03632 | 890 | Pfam | PPR repeat family | 301 | 350 | IPR002885 | - | |
| Pste2g03632 | 890 | Pfam | PPR repeat family | 200 | 245 | IPR002885 | - | |
| Pste2g03632 | 890 | Pfam | PPR repeat family | 127 | 176 | IPR002885 | - | |
| Pste2g03632 | 890 | Pfam | PPR repeat family | 372 | 420 | IPR002885 | - | |
| Pste2g03632 | 890 | Pfam | PPR repeat family | 489 | 537 | IPR002885 | - | |
| Pste2g03632 | 890 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 93 | 127 | IPR002885 | - | |
| Pste2g03632 | 890 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 407 | 441 | IPR002885 | - | |
| Pste2g03632 | 890 | Gene3D | Tetratricopeptide repeat domain | 180 | 295 | IPR011990 | GO:0005515 | |
| Pste2g03632 | 890 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 163 | 197 | IPR002885 | - | |
| Pste2g03632 | 890 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 302 | 336 | IPR002885 | - | |
| Pste2g03632 | 890 | PANTHER | MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 | 271 | 584 | - | - | |
| Pste2g03632 | 890 | NCBIfam | pentatricopeptide repeat | 131 | 163 | IPR002885 | - | |
| Pste2g03632 | 890 | NCBIfam | pentatricopeptide repeat | 234 | 254 | IPR002885 | - | |
| Pste2g03632 | 890 | NCBIfam | pentatricopeptide repeat | 527 | 560 | IPR002885 | - | |
| Pste2g03632 | 890 | NCBIfam | pentatricopeptide repeat | 271 | 303 | IPR002885 | - | |
| Pste2g03632 | 890 | NCBIfam | pentatricopeptide repeat | 305 | 338 | IPR002885 | - | |
| Pste2g03632 | 890 | NCBIfam | pentatricopeptide repeat | 200 | 228 | IPR002885 | - | |
| Pste2g03632 | 890 | NCBIfam | pentatricopeptide repeat | 409 | 435 | IPR002885 | - | |
| Pste2g03632 | 890 | NCBIfam | pentatricopeptide repeat | 165 | 196 | IPR002885 | - | |
| Pste2g03632 | 890 | NCBIfam | pentatricopeptide repeat | 374 | 407 | IPR002885 | - | |
| Pste2g03632 | 890 | NCBIfam | pentatricopeptide repeat | 493 | 526 | IPR002885 | - | |
| Pste2g03632 | 890 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 198 | 228 | IPR002885 | - | |
| Pste2g03632 | 890 | Gene3D | Tetratricopeptide repeat domain | 596 | 764 | IPR011990 | GO:0005515 | |
| Pste2g03632 | 890 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 525 | 559 | IPR002885 | - | |
| Pste2g03632 | 890 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 372 | 406 | IPR002885 | - | |
| Pste2g03632 | 890 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 490 | 524 | IPR002885 | - | |
| Pste2g03632 | 890 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 267 | 301 | IPR002885 | - | |
| Pste2g03632 | 890 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 232 | 266 | IPR002885 | - | |
| Pste2g03632 | 890 | Pfam | PPR repeat | 271 | 299 | IPR002885 | - | |
| Pste2g03632 | 890 | Pfam | PPR repeat | 670 | 695 | IPR002885 | - | |
| Pste2g03632 | 890 | Pfam | PPR repeat | 96 | 125 | IPR002885 | - | |
| Pste2g03632 | 890 | Pfam | PPR repeat | 633 | 657 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pste2g03632 | 232 | 698 | Glycosyltransferase | AT1G05670 | 24.786 | 6.78e-41 | 159 |