Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g03612 CAACAAGTAAACCTCTCCATTCTTAAATCCTTTCTATACCCTACACAATGGCCATTGTAGCAACATCTACCATCTCTTTTCTCTTCTTTCTTCTTAACTTGTGCCTCAGAGGCACTTATGCTGACTATGGAGGTGGATGGCAAGGTGGTCATGCCACATTTTATGGTGGGGGTGATGCTTCTGGCACAATGGGAGGGGCTTGTGGTTATGGTAATTTGTACAGCCAGGGTTATGGTACTAACACTGCTGCACTCAGCACTGCTCTATTCAACAATGGCTTGAGTTGCGGGTCTTGCTATGAGATGAAATGTGACAATGACCCCAGATGGTGCCTCCCCGGTAGCATAATCGTCACTGCCACAAACTTCTGCCCCCCTAACTTTGCATTGGCTAATAACAATGGTGGTTGGTGCAACCCTCCCTTGCAACACTTCGATCTGGCTGAGCCTGCTTTCTTACAAATTGCTCAATACAAAGCTGGAATTGTTCCTGTTTCCTTCCGAAGGTTCACCATCAATGGTCACTCTTACTTCAACTTGGTTCTGGTGACAAATGTTGGTGGAGCTGGTGATGTTCATTCTGTGTCCATCAAAGGGTCAAGGACTGGCTGGCAAACCATGTCTAGAAACTGGGGACAGAACTGGCAAAGCAATTCCTACCTGAATGGCCAGAGCCTCTCTTTTCAGGTCACTTTAAGTGATGGCAGGACTATCACTAGCAACAACATTGTGCCTGCTAACTGGCAATTTGGACAAACATTTGAAGGGGAACAATTCTAG 779 0.4621 MAIVATSTISFLFFLLNLCLRGTYADYGGGWQGGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCDNDPRWCLPGSIIVTATNFCPPNFALANNNGGWCNPPLQHFDLAEPAFLQIAQYKAGIVPVSFRRFTINGHSYFNLVLVTNVGGAGDVHSVSIKGSRTGWQTMSRNWGQNWQSNSYLNGQSLSFQVTLSDGRTITSNNIVPANWQFGQTFEGEQF 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g03612 243 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 153 IPR007112 -
Pste2g03612 243 SUPERFAMILY PHL pollen allergen 153 240 IPR036749 -
Pste2g03612 243 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 161 240 IPR007117 -
Pste2g03612 243 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Pste2g03612 243 PRINTS Expansin signature 197 218 IPR002963 GO:0009664
Pste2g03612 243 PRINTS Expansin signature 162 183 IPR002963 GO:0009664
Pste2g03612 243 PRINTS Expansin signature 226 242 IPR002963 GO:0009664
Pste2g03612 243 PRINTS Expansin signature 150 162 IPR002963 GO:0009664
Pste2g03612 243 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Pste2g03612 243 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Pste2g03612 243 PANTHER EXPANSIN-A15 11 243 IPR002963 GO:0009664
Pste2g03612 243 CDD DPBB_EXPA_N 30 153 - -
Pste2g03612 243 FunFam Expansin 152 243 - -
Pste2g03612 243 Pfam Lytic transglycolase 66 151 IPR009009 -
Pste2g03612 243 Pfam Expansin C-terminal domain 153 229 IPR007117 -
Pste2g03612 243 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Pste2g03612 243 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Pste2g03612 243 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576
Pste2g03612 243 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Pste2g03612 243 PRINTS Expansin/Lol pI family signature 188 202 IPR007118 GO:0005576
Pste2g03612 243 FunFam Expansin 20 157 - -
Pste2g03612 243 Gene3D - 20 153 IPR036908 -
Pste2g03612 243 Gene3D - 154 243 IPR036749 -
Pste2g03612 243 SMART dpbb_1 66 151 IPR007112 -
Pste2g03612 243 SUPERFAMILY Barwin-like endoglucanases 13 169 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g03612 Pste-Chr2 38384484 38385889 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g03612 7 243 Expansin Gene Family AT2G40610 77.016 3.23e-137 384