Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g03610 ATGGCTGTTCATCACCGCTTGTTGCTTGACACAAACTCAACCGCTGCTGCACCAAGTAGCATGAATAGGACAAGAGACACTTTCGTAGATGATGCAAATTTTGACACCAACATGGTGATTATTTTGGCTGCGTTGCTTTGTGCACTTATATGTGCTTTGGGGCTTAACTCAATTGTGCGATGTGCTCTAAGATGTAGCCGCAGATTTGCTTTTGAGACCCCAGAGGAGACCGCAGCACGTTTGGTCGCAAAAGGCCTAAAGAAGAGTGCATTGCATCAGATCCCTATAGTTGTTTATGGTTCAGGTAGTGCTAGTATTGCAGCCACAGACTGTCCAATTTGCCTTGGGGAGTTTGTGGATGGAGAGAAAGTTAGAGTTTTGCCAAAATGTAACCATGGATTCCATGTAAGGTGCATAGATACCTGGCTCCTCTCACACTCATCTTGTCCTAATTGCAGACAATCTTTGCTTGAGCAGCCAACTGTTTCCGGAGCTGTAGATGCAGGAACCAGTCACCATGCAGGGAATGCCATGGGAGGACATGAACATGAGTCTATAGCTGTGGCTGTGGAAGAGGTTGGCTAA 585 0.4632 MAVHHRLLLDTNSTAAAPSSMNRTRDTFVDDANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETPEETAARLVAKGLKKSALHQIPIVVYGSGSASIAATDCPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRQSLLEQPTVSGAVDAGTSHHAGNAMGGHEHESIAVAVEEVG 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g03610 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 161 IPR013083 -
Pste2g03610 194 CDD RING-H2_EL5-like 110 153 - -
Pste2g03610 194 SUPERFAMILY RING/U-box 110 159 - -
Pste2g03610 194 Pfam Ring finger domain 110 153 IPR001841 -
Pste2g03610 194 PANTHER RING-H2 FINGER PROTEIN ATL78 6 166 IPR044602 GO:0016567|GO:0016740
Pste2g03610 194 SMART FANCL_C_2 107 160 - -
Pste2g03610 194 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Pste2g03610 194 SMART ring_2 111 152 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g03610 Pste-Chr2 38349749 38350333 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g03610 6 161 C3H Transcription Factor Family AT3G10910 62.424 2.90e-63 192