Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g03596 GACCCAGCCGCAGCTGCAGAAAAAACAACAGGCTCTCCATTCTGGAGGAAATAGTGGTTGAGTTCCATGGAGAAGGACTTGGTGGAGTTGTACGAAGCGGCCAAGAAAGCCGCTGATGCCGCCATCTCCGGCGATGCCCAACATGAGGAAAACCGATGCATCGATGCGCTTGAACAGCTCAAGAAATTTCCTGTTAATTACAAGATTCTCGTCAACACCCAGGTGGGCAAACATCTTAAAGTTCTCACAAAGCACCCAAGGCAGAAAATTAAGGCCTTTGCTATTGACCTGATTGAGATATGGAAAGGCATTATCATCAAGGAAACAAGCAAAAATAAAAATGGGGGGTCTGATAGTAAGGTTGAGTCGGCTAATGGGGATAGATCTAAAGCTGGGAAAATGCAAAAGAGTCCTTCGGTGAAGGTAGAAAAAGGTGACACTGTCAAGCTTGAGGAAATTGATAGGAATGGTAGCTCAAAGTCAAGCTCAGAAAGCATGAAAAAGGTACAAAATGATGTCAAGAATGAGAAAACTGATCGTGCTGCAAGTGTCAAGGTGGAAAAGATGGCTAAGGACGAAAGGCCAGTATCTGGTGCAAAGAAAATGTCATCCAGTTCTGCAACTCCTCCAAAGCTAAAAACTATGATTAAATCTAATGATGCAACACGAGACAAAATAAGGGAACTTCTCCATGAGGCTTTATCCAAGGTTGCTGGAGAGGCCGATGAAGATCTTGTAGATATAGTCAATGCTTCTGATCCTATTCGGGTTGCTGTGACTGTGGAATCAGTATTATTTGAAAAATGGGGTCCTTCAAATGGGGCACAAAAGGTCAAGTATAGATCCTTAATGTTTAACCTGAAGGATTCAAACAACCCTGATTTCCGACGAAAAGTTCTTCTGGGTGTTGTTGAGCCCGAGCAATTGATCAACATGAGCACAGCAGAAATGGCTAGTGAGCAAAGGAAGCAGGAAAATCAGAAAATCACAGAGAAAGCTTTATTTGAATGTGAGCGTGGAGGTCAACCAAAAGCGACAACCGATCAATTTAAGTGTGGCCGATGTGGTCAAAGGAAGTGCACCTATTACCAAATGCAGACTCGGAGTGCCGATGAACCAATGACAACCTATGTCACATGTTGCGTCTGCAATAACCGGTGGAAGTTCTGCTCTATTAGGTTCGTGGATTGGTTGGGATTAAGGGGTCAGCGAAGTTCCAGATATTGGGATGATTATGAGGGGTGAAGGTGCTATCAGGGAACTGTGAATGGCAGTGGCCACACCTTGTTATGCAAAGAGGAAGAGATGCACTCATATAGGATGACACAAGGAAGTTTGTGGCAGTGGTGAGGCAGCCAGGACGAGTGTCCAAATAATGTGGGTCACGTCTTCTCTTTAGATTATGG 1406 0.4438 MEKDLVELYEAAKKAADAAISGDAQHEENRCIDALEQLKKFPVNYKILVNTQVGKHLKVLTKHPRQKIKAFAIDLIEIWKGIIIKETSKNKNGGSDSKVESANGDRSKAGKMQKSPSVKVEKGDTVKLEEIDRNGSSKSSSESMKKVQNDVKNEKTDRAASVKVEKMAKDERPVSGAKKMSSSSATPPKLKTMIKSNDATRDKIRELLHEALSKVAGEADEDLVDIVNASDPIRVAVTVESVLFEKWGPSNGAQKVKYRSLMFNLKDSNNPDFRRKVLLGVVEPEQLINMSTAEMASEQRKQENQKITEKALFECERGGQPKATTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCCVCNNRWKFCSIRFVDWLGLRGQRSSRYWDDYEG 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g03596 392 SMART mid_6 198 306 IPR003618 GO:0006351
Pste2g03596 392 PIRSF TFIIS 2 368 IPR035100 -
Pste2g03596 392 CDD TFIIS_I 23 83 - -
Pste2g03596 392 ProSiteProfiles Zinc finger TFIIS-type profile. 326 366 IPR001222 GO:0003676|GO:0006351|GO:0008270
Pste2g03596 392 ProSiteProfiles TFIIS N-terminal domain profile. 7 86 IPR017923 -
Pste2g03596 392 SUPERFAMILY Zinc beta-ribbon 307 366 - -
Pste2g03596 392 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1 98 IPR035441 -
Pste2g03596 392 Pfam Transcription factor S-II (TFIIS), central domain 197 314 IPR003618 GO:0006351
Pste2g03596 392 SUPERFAMILY Elongation factor TFIIS domain 2 185 298 IPR036575 GO:0006351
Pste2g03596 392 SMART TFS2_5 8 85 IPR003617 GO:0005634
Pste2g03596 392 MobiDBLite consensus disorder prediction 89 190 - -
Pste2g03596 392 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 14 368 - -
Pste2g03596 392 ProSitePatterns Zinc finger TFIIS-type signature. 330 365 IPR001222 GO:0003676|GO:0006351|GO:0008270
Pste2g03596 392 Pfam Transcription factor S-II (TFIIS) 328 366 IPR001222 GO:0003676|GO:0006351|GO:0008270
Pste2g03596 392 FunFam Probable Transcription elongation factor S-II 297 368 - -
Pste2g03596 392 CDD Zn-ribbon_TFIIS 321 367 - -
Pste2g03596 392 NCBIfam transcription elongation factor S-II 12 368 IPR006289 GO:0003676|GO:0005634|GO:0006368
Pste2g03596 392 SMART Cys4_2 328 367 IPR001222 GO:0003676|GO:0006351|GO:0008270
Pste2g03596 392 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 25 98 IPR035441 -
Pste2g03596 392 Gene3D - 175 296 IPR036575 GO:0006351
Pste2g03596 392 MobiDBLite consensus disorder prediction 145 176 - -
Pste2g03596 392 Gene3D - 297 368 - -
Pste2g03596 392 Pfam TFIIS helical bundle-like domain 34 83 IPR017923 -
Pste2g03596 392 MobiDBLite consensus disorder prediction 115 136 - -
Pste2g03596 392 ProSiteProfiles TFIIS central domain profile. 200 323 IPR003618 GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g03596 Pste-Chr2 38070317 38075063 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Pste2g03596 TFIIS_M 9.9e-32 No_clan