Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g03572 TCATCCAAATACATTCATTCAATTCATGCCATTAATGGCTCCAAGAAGACCCCAAAAGGTTGTACAAATGGTAGAACCTAACGAGGCTAAGAAAAACGTGGTCAAAACTTTATCATTCTTCAAACTCTTGAGCTATGCAGACATGGTAGATTGGATTCTGATGGGTTTGGGAGCTCTGGGTTCTATTGTACATGGTATGGCATTTCCTGTTGGGTATCTCTTGTTGGGAAAAGCTCTTAATGCTTTTGGGAACAACATCCAAAACATAGATGCCATGGTTATTGCTCTTAAAAAGGTTGTTCCATACGTGTGGTATATGGCCATCGCCACATTTCCTGCTGGGGTACTTGAGATTGGTTGTTGGATGTATGCAAGTGAAAGACAGTTATTTAGACTAAGATTAGCATATCTTAGAGCAGTCCTGAACCAAGAGATAGGGGCTTTTGATACAGAATTAACAAGTGGAAAAGTTATCAGTGGAATAAGTAAGCACATGAGTGTAATACAAGATGCCATTGGTGAGAAGGTCAGCAAATCAATGATGTTGGGTCACTTCACCTCTAGCTGTGCAACTTTCTTTGCTGGAATTGTGATTGCTGTTGTATGCAGTTGGGAAGTGGCGCTTCTCTGTTTAGTTGTTGTACCGGTTATTCTTATAATTGGGGCAACTTACACCAAGAAAATGAACAGCATATCAGCCACCAAAATGCTTTTCAATTCTGAAGCTACATCTATGATAGAGCAGACAATATCACAAATAAAAACAGTTTATGCTTTTGTTGGAGAGAGCTCTGCAACCAAATCCTTTAAAGAGAACATGGAAAAACAATACATTATAAGCAAAGAGGAGGCACTTGTGAAGGGCGTTGGGACAGGGATGTTTCAAACAGTGAGTTTCTGTTCTTGGGCTCTCATTGTATGGGTAGGAGCTGTTGTGGTCAGGGCTGGAAGAGCAAGTGGAGGAGACATAATAGCTGCAGTGATGAGATATGAAGTTTTCCAAGTTATCCAAAGAAAGCCTTTAATAAGTAATGAATCGGAAGGGAAGATGCCTAGAAAAATCAATGGTGACATTGACTTACGAGATGTTAACTTTTCCTACCCGTCACGACCAGAGAAAGCAATCCTTCAAGGACTGACCTTGTCGATTCCAGCAGGAAAGACAGTAGCACTAGTTGGTAGCAGTGGCTGTGGAAAGAGCACTGTTATTTCCTTGGTCAGCAGATTTTATGACCCATCCAGTGGAGAAATTTTTATTGATCATCACAATATCAAGGATCTCGATGTGAAGTTCCTACGAAGAAATATAGGGGTTGTTTCCCAAGAACCATCACTCTTTGCAGGGACCATCAAAGATAACTTGAAAGTGGGAAAAATGGACGCAGATGATCAAGAAATTCAGAAGGCAGCAGTAATGTCAAACGCACACTCTTTCATATCACAGCTGCCTAACCAGTACCTAACAGAGGTAGGAGAAAGGGGTATCCAATTATCAGGAGGTCAAAAACAGAGAATTGCAATAGCAAGAGCCGTTCTGAAAAATCCTCCCATCCTTCTGCTTGATGAGGCCACTAGTGCCCTTGATTCAGAGTCTGAAAAGCTGGTTCAACAAGCACTTGAAACAGCTATGCAGGGAAGGACTGTTATCTTGATTGCACACAGGCTCTCAACAGTTGTAAATGCAGATATGATTGCTGTAATAGAGAATGGACAAGTTGCAGAGACAGGAACACACCAGAGTTTGTTAGACACAAGCAAATTCTATAGTACGTTATTCAGCATGCAGAACCTCGAACCAGTTCCTGAATCCAGAGCAACAATTTCCAAGAATAAAAGTGTCCGCCAAGAAGATTTTCCTGATGAAACTAGACCTCTAGTAGAGGTGCAGGGAGATGTCCAAATAAATATCACTGATTATTCTGTGCTAAAGGAACAGAATAAAATGAACAGTAGAGAAAGAAATATATTTTTCAGAATTTGGTTTGGTTTAAAAAGGAGGGAATCGGTGAAGATTGCTATTGGCTCATTTTCAGCAGCTTTCTCTGGCATCTCAAAGCCATTTTTTGGTTTCTACATCATCACCATTGGAGTAGCATACTTCCATGATGATGCAAAACGAAAAGTAGGATTTTATTCAGCCATCTTCAGTGCAATAGGGTTGCTTTCATTATTCAGCCACACCTTCCAGCATTACTTCTTTGGAGTGATTGGGGAAAAGGCCATGGCAAATCTCAGATGTGCTCTGTATTCAGGTGTGATGCATAATGAAGTAGGCTGGTTTGAAAAATCAGAGAATTCTGTTGGTTCATTGACTTCACGTATTATCAGTGACACTGCTATGGTCAAAGTCATCATTGCAGATCGAATGTCTGTGATTCTGCAATGTGTTTCCTCCATACTGATAGCAACAGTTGTCAGCATGTATGTCAACTGGAGAATGGGTTTGGTAGCTTGGGCTGTGATGCCCTGCCACTTCATAGGTGGCCTCATTCAAGCCAAGTCCGCCAAAGGATTTTCAGGTGACTACTCTGCTGTGCATTCTGAACTTGTTGCTCTTGCATCTGAGTCCACAACCAACATAAGGACTATTGCATCATTTTGTCATGAAGAACATGTACTGAGGAAAGCCAAAACATCCCTGGAAATTCCAAAGAAAAAGTATATGAAAGAAAGTATCAAATATGGGATCATTCAAGGCTTCTCCCTTTGTTTGTGGAACATTGCACATGCCGTTGCTTTGTGGTACACAACAGTTCTGGTTGATAGACGTCAAGCCACCTTCGAAAATGGAATAAGATCATACCAAATTTTTTCTCTCACAGTTCCTTCTATCACAGAATTATACACACTGATCCCAACTGTCGTCTCTGCTATTAATATACTAACCCCAGCATTCAAAACCCTTGACCGTAAAACTGAAATTGAACCAGACACACCAGATGATTCCCAACCTGAGAGGATCCAAGGAAAGGTAGAATTTGAAAATGTAAAATTCAACTACCCTTCAAGACTTGCAATCACTGTTCTTGACAAATTTAGTTTACAAATTGAACCTGGATTGAAGGTGGCTTTTGTAGGACCAAGTGGAGCTGGAAAATCCTCTGTTTTGGCCCTTTTACTGAGATTTTATGATCTACAGGAAGGAAAAGTATTAATTGATGGGAAAGACATACAGAAATATAATCTAAGATGGTTAAGGAAACAAATAGGACTGGTACAACAAGAGCCACTGCTCTTTAATTGCTCGATTAGAGACAATATTTGCTATGGCAATAATGGGGCTTCTGAAAGTGAAATAGTGGAGGTTGCTAAAGAAGCAAATGTACATGAATTTGTAAGTAATCTACCAAATGGATATAACACTGTTGTTGGAGAGAAAGGCTGCCAACTTTCAGGAGGACAAAAGCAAAGAATAGCCATTGCCAGAACACTAATAAAAAGGCCTGCAATATTACTCCTTGATGAAGCAACAAGTGCTCTTGATGCTGAGTCTGAAAGAATTATAATAAATGCTTTAAAAGCAATACATCTGAAGGAAGACAGTGGTTTGTGTTCAAGAACCACCCAGATCACAGTAGCTCATAGGCTCTCCACAGTAATAAACTCAGATACTATAATTGTCATGGATAAAGGTAAAGTTGTAGAGATGGGTTCCCACTCAACCCTAATAGCAGCAGAGGCAGGACTTTATTCAAGGATGTTCAGTGTATGCATTCCTCTTTTTATGAGTTTCTCCCATCCAATTTTCTGCCTTAATGATCTTTCAAGAGCAGCCGTACACTATAATGAGAAATTACAACATTTGAAACTTGAAAGCATATATAAATCATTGCACAACATGCATCTTCCA 3850 0.4003 MPLMAPRRPQKVVQMVEPNEAKKNVVKTLSFFKLLSYADMVDWILMGLGALGSIVHGMAFPVGYLLLGKALNAFGNNIQNIDAMVIALKKVVPYVWYMAIATFPAGVLEIGCWMYASERQLFRLRLAYLRAVLNQEIGAFDTELTSGKVISGISKHMSVIQDAIGEKVSKSMMLGHFTSSCATFFAGIVIAVVCSWEVALLCLVVVPVILIIGATYTKKMNSISATKMLFNSEATSMIEQTISQIKTVYAFVGESSATKSFKENMEKQYIISKEEALVKGVGTGMFQTVSFCSWALIVWVGAVVVRAGRASGGDIIAAVMRYEVFQVIQRKPLISNESEGKMPRKINGDIDLRDVNFSYPSRPEKAILQGLTLSIPAGKTVALVGSSGCGKSTVISLVSRFYDPSSGEIFIDHHNIKDLDVKFLRRNIGVVSQEPSLFAGTIKDNLKVGKMDADDQEIQKAAVMSNAHSFISQLPNQYLTEVGERGIQLSGGQKQRIAIARAVLKNPPILLLDEATSALDSESEKLVQQALETAMQGRTVILIAHRLSTVVNADMIAVIENGQVAETGTHQSLLDTSKFYSTLFSMQNLEPVPESRATISKNKSVRQEDFPDETRPLVEVQGDVQINITDYSVLKEQNKMNSRERNIFFRIWFGLKRRESVKIAIGSFSAAFSGISKPFFGFYIITIGVAYFHDDAKRKVGFYSAIFSAIGLLSLFSHTFQHYFFGVIGEKAMANLRCALYSGVMHNEVGWFEKSENSVGSLTSRIISDTAMVKVIIADRMSVILQCVSSILIATVVSMYVNWRMGLVAWAVMPCHFIGGLIQAKSAKGFSGDYSAVHSELVALASESTTNIRTIASFCHEEHVLRKAKTSLEIPKKKYMKESIKYGIIQGFSLCLWNIAHAVALWYTTVLVDRRQATFENGIRSYQIFSLTVPSITELYTLIPTVVSAINILTPAFKTLDRKTEIEPDTPDDSQPERIQGKVEFENVKFNYPSRLAITVLDKFSLQIEPGLKVAFVGPSGAGKSSVLALLLRFYDLQEGKVLIDGKDIQKYNLRWLRKQIGLVQQEPLLFNCSIRDNICYGNNGASESEIVEVAKEANVHEFVSNLPNGYNTVVGEKGCQLSGGQKQRIAIARTLIKRPAILLLDEATSALDAESERIIINALKAIHLKEDSGLCSRTTQITVAHRLSTVINSDTIIVMDKGKVVEMGSHSTLIAAEAGLYSRMFSVCIPLFMSFSHPIFCLNDLSRAAVHYNEKLQHLKLESIYKSLHNMHLP 1275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g03572 1275 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 48 320 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste2g03572 1275 ProSitePatterns ABC transporters family signature. 1122 1136 IPR017871 GO:0005524|GO:0016887
Pste2g03572 1275 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 983 1227 IPR003439 GO:0005524
Pste2g03572 1275 Coils Coil 1243 1263 - -
Pste2g03572 1275 Pfam ABC transporter transmembrane region 47 324 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste2g03572 1275 Pfam ABC transporter transmembrane region 665 927 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste2g03572 1275 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 350 586 IPR003439 GO:0005524
Pste2g03572 1275 SUPERFAMILY ABC transporter transmembrane region 34 320 IPR036640 GO:0005524|GO:0016020
Pste2g03572 1275 Pfam ABC transporter 368 517 IPR003439 GO:0005524
Pste2g03572 1275 Gene3D ABC transporter type 1, transmembrane domain 320 949 IPR036640 GO:0005524|GO:0016020
Pste2g03572 1275 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 975 1227 IPR027417 -
Pste2g03572 1275 Gene3D - 973 1229 IPR027417 -
Pste2g03572 1275 CDD ABC_MTABC3_MDL1_MDL2 983 1225 - -
Pste2g03572 1275 FunFam ABC transporter B family member 1 973 1229 - -
Pste2g03572 1275 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 341 587 IPR027417 -
Pste2g03572 1275 Gene3D - 348 604 IPR027417 -
Pste2g03572 1275 CDD ABC_6TM_Pgp_ABCB1_D1_like 46 320 - -
Pste2g03572 1275 FunFam ABC transporter B family member 4 340 594 - -
Pste2g03572 1275 SMART AAA_5 377 569 IPR003593 GO:0016887
Pste2g03572 1275 SMART AAA_5 1010 1204 IPR003593 GO:0016887
Pste2g03572 1275 CDD ABC_MTABC3_MDL1_MDL2 350 587 - -
Pste2g03572 1275 CDD ABC_6TM_Pgp_ABCB1_D2_like 653 966 - -
Pste2g03572 1275 SUPERFAMILY ABC transporter transmembrane region 654 969 IPR036640 GO:0005524|GO:0016020
Pste2g03572 1275 Pfam ABC transporter 1001 1150 IPR003439 GO:0005524
Pste2g03572 1275 Gene3D ABC transporter type 1, transmembrane domain 33 319 IPR036640 GO:0005524|GO:0016020
Pste2g03572 1275 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 664 948 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste2g03572 1275 ProSitePatterns ABC transporters family signature. 489 503 IPR017871 GO:0005524|GO:0016887
Pste2g03572 1275 PANTHER ABC TRANSPORTER B FAMILY 636 1227 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g03572 Pste-Chr2 37629372 37638991 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g03572 6 1228 Calmodulin-binding Proteins AT2G36910 40.234 0.0 919