Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g03550 GTCACCACTACACTACACACCACACTGTCAGGGAAAGTTTCTCTCTTCATCTGCTGCGGTCGCGCTCCTTTACCTCAGAAAAAAAAAGAAAGAAAAAGTTAGAAAAAGCTATGGGCCACAACCACAACACCTGAATAAACTCCTCTGAATTATTCCTTTGATTCTCAATATTCTGCTTGGGTTTATTTCTGTATAATTGGTCGCGGGTCCTTTCAAGATTTTTTTCCCCTTTCTTTTTAGTTTGGTTTGGTTGGGTGAGTATGGGTTCTGTCGACTGTTATCCGTCGCGTGGGGACGATACGGCCGTGGTGTCTATGGATTCGCTGCCGTTAGGGTTTCGCTTTCGACCTACCGACGAGGAACTCATCAATCACTACCTCCGACAGAAGATCAACGGTAATGGTCGCGAGGTTTGGGTTATCCGAGAAATTGATGTCTGCAAATGGGAGCCTTGGGACATGCCTGATTTGTCGGTGATACGGAACAAGGATCCGGAGTGGTTCTTCTTCTGTCCACAGGATCGAAAGTACCCAAATGGGCACCGATTGAACAGAGCAACGAATCATGGGTATTGGAAGGCAACGGGGAAGGATCGTAAAATAAAGTCCGCTACGATCTTGATTGGAATGAAGAAGACTTTGGTGTTCTACACTGGTCGTGCGCCAAAAGGGAAGAGGACCAACTGGGTTATGCACGAGTATCGCCCCACTTTGAAGGAGCTTGATGGTACCAATCCTGGACAGAGTGCGTATGTCCTTTGTCGCTTGTTTAAGAAACATGATGAGAGCCTTGAAGTTTCGCTCTGTGATGAAACAGAGCAGACTGATTCAACTCCTGTGGTTAATCATCACTCCACAGAGGAAATACAGTCTGATCTGGCTGCTGTTGCAGTATCCCCTTCACAGGTTACAGAAGATGACAAGCATCAGGCAACTATACCAGCGCAGTCCGAGGAAGCAATGTCCAACATTATAACTCCGGTTGATTGCCATAGTGATGGATACGATGCTGGCGATGCACAACTTCAAATTGTGGCACCATCTGCCGAGGAGTTTCCGCCACTGGACATTGGCATATATTATGACCCTAAAAATGAGCTACTGGATGACAGATTATTCTCCCCTGTACTTTCACATATTCAACCAGAATTTCATTATCAAGCAAACATGGAGTCAGACGGTCGATATGGGCTTCAATATGGTACAAATGAGATAAACATGTCAGACTTTTTGAACTCGGTTGTTAACTGGGATCAAGTTCCCTATTATGAGGAGCCTAATTGTCAACAGCAGAGCTACCCCTCATTTGATGTTAAGAATAATACATTCAGCAGCGATATAGATGCTGAACTGACCAATATGACATCTATGCAAGCTGGTTATGCTGTGGAGTCAATTGACAGAAAGATTCCTTTCGTGATAACTCCAGAATTTTGCAGCACCACTGGCATCCCCATAGACTGTGTTGGTAATGAGCAGAAGAGCAATGTTGGGTTATTTGAAAACAATTCCCAGATGGCTTTTTCTGATGTTAATATGGGCCAAGTACATAATGTAGTCAATGATTATGAGCAACCTAAAATCTATAGCACAGTTGCTAGTGGTGATACTGGAATCATAAGGAGGACTCGACTGGTACAAAATCCACAGCCAAGCGGAGACTCAACACAGGGTACTGCACAGAGGAGAATTCGTTTGTTAAAGGTTACACATAACTCAAATAAGATGGTGAAAAGTGGAAGTTGTGCACAAGAACAGCTTAATTCAAAACCAATCGTTGCTGTGGAGCAGAAAGCTTCAGAAAACCATGTTTCTGATGAAAGTTCTACTCTTACTAATGATGGTAGTGAGCTGCTGAAGACACCTGAGTCAACCGGCAACAGAAAGATTTCTCGACAAGTCAAAAAAGCAGGTTTCACGTTGGGGTTAAAAGACATTTTATTGCTCAGAAGGGTGCCATATATTTCTAAGGCTTTCTCCAATCGCACCAAGTGCTCTTCGATTTTTGTAGTTTCTGCCTTTGTAATGGTCTCATTAGTGTTCTTCACCGACATTTGGGGATACCTTAAATTTTAACCTGCTACGAGATCATTCCTTTGTTTTAGTTTTTTTTCCTGCCTCCATTTCTTTTTTGGCGAATTGAGGGGAGGCATGTAGGCTCTACGTAGATTTGTTGATAGTTAAGTATAAATGCGAGTGCATATGTATTTGGTATATTATATGTATGGCCACCTGGTTGGCTAGTCTGTAGACTCTTGCTGTACATTAGATATATATACAGTTCTTTTTATCCAA 2294 0.4289 MGSVDCYPSRGDDTAVVSMDSLPLGFRFRPTDEELINHYLRQKINGNGREVWVIREIDVCKWEPWDMPDLSVIRNKDPEWFFFCPQDRKYPNGHRLNRATNHGYWKATGKDRKIKSATILIGMKKTLVFYTGRAPKGKRTNWVMHEYRPTLKELDGTNPGQSAYVLCRLFKKHDESLEVSLCDETEQTDSTPVVNHHSTEEIQSDLAAVAVSPSQVTEDDKHQATIPAQSEEAMSNIITPVDCHSDGYDAGDAQLQIVAPSAEEFPPLDIGIYYDPKNELLDDRLFSPVLSHIQPEFHYQANMESDGRYGLQYGTNEINMSDFLNSVVNWDQVPYYEEPNCQQQSYPSFDVKNNTFSSDIDAELTNMTSMQAGYAVESIDRKIPFVITPEFCSTTGIPIDCVGNEQKSNVGLFENNSQMAFSDVNMGQVHNVVNDYEQPKIYSTVASGDTGIIRRTRLVQNPQPSGDSTQGTAQRRIRLLKVTHNSNKMVKSGSCAQEQLNSKPIVAVEQKASENHVSDESSTLTNDGSELLKTPESTGNRKISRQVKKAGFTLGLKDILLLRRVPYISKAFSNRTKCSSIFVVSAFVMVSLVFFTDIWGYLKF 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g03550 604 MobiDBLite consensus disorder prediction 513 540 - -
Pste2g03550 604 Gene3D NAC domain 31 176 IPR036093 GO:0003677|GO:0006355
Pste2g03550 604 MobiDBLite consensus disorder prediction 517 540 - -
Pste2g03550 604 ProSiteProfiles NAC domain profile. 22 172 IPR003441 GO:0003677|GO:0006355
Pste2g03550 604 Pfam No apical meristem (NAM) protein 23 148 IPR003441 GO:0003677|GO:0006355
Pste2g03550 604 FunFam Nac domain-containing protein 86 31 175 - -
Pste2g03550 604 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 21 227 - -
Pste2g03550 604 SUPERFAMILY NAC domain 17 172 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g03550 Pste-Chr2 37200570 37203870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g03550 15 214 NAC Transcription Factor Family AT4G35580 69.500 5.60e-93 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste2g03550 NAM 6.6e-36 No_clan