Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g03518 GTTGTTGGCGTATTCTGAAGACTACACAATAATATCGTTTTAATATTGATTTTTCTTTCTCATGTCTATTTTCCCTTTCTTTTATCGTTGTTATAGGAAAGGTTACTCCAAATTAGTCGATTTGATTATTAAGGTTGTTGTAACTCACTGGGGGTGAAATCTTTAATAGAGGTTGAAGAATCTTGTTACCAGCTATTCCGTTGTATTGTAGGGTTGTAATTGTAATTCAAAAATGAGTATATACACGTGTGTTTTAGATAGGGAAGGTAGAGAAATGTAGCCCCACTCACTACATATCCAGGGACAATTAACTTGATTTAACAAGTGTGTACAAATACAATTAGGGATCATGTTGCAAATTTTTGCCAGGGATGATTTTTCAATGCTGTTAAAGAGAGCTGAGTAAGGTTTAAGAATATGTCGATGTTACTTTGATCTCATGAAATCAATGCTTTCTTTATGATAGATGACAAGCGCTTGGACAAATATGAGCTTTGCAATCAAACATAGGGATATAGAGAGGGAATGGGAGAATCGGGGTGGAGTTATGGTTATTTTTTTAAAATTATTGGAGATTCTTGCTCCCTCTCAGAAGATGTATGCCTGCTAATATTCTGGAAAGGATGAGGAGATCAAATTTAATTTCAATATTGTTATAGCTTTGGAGCATCTTGGAGCAAATGAGCAATGGAGCTTGTGGAGAACGGCTCACCTCAAGGATTGCTCTCTTGGTTTGCTTCATAGTTTTGGTTTTATTTATTTTTGTGTAATCACTAGAGTAATGATGATGATAATTAGACAGTTTAGGTGTAGGTGTTGCTTCAAAAAGTGAGAACTATTCTTTGCTGACAAGCTTCCGATTTGGTTTGTAGATAATCTGGTTAACTCTTATCAAACATGAGTGGTCGCTTTTCTCGCACAATTTATGTTGGCAACTTGCCTTCTGATATAAGAGAGTCAGAAATTGAAGATCTATTCTACAAGTATGGTCGTATAATGGACATTGAATTGAAGATTCCTCCGCGCCCTCCATGTTATTGCTTTGTTGAGTTTGATAATGCTCGAGATGCTGAAGATGCAATTCGGGGTCGAGATGGATACAACTTTGATGGTTGTCGGTTAAGGGTGGAGCTTGCTCATGGTGGTAGAGGGCCATCATCAAGTGATCGGCGTGGATACGGAGGAGGTGGTGGTGGTGGCGGGGGCCGTTTTGGCATCTCACGTCATTCTGAATTTCGAGTTATTGTTCGTGGACTCCCATCTTCTGCATCCTGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTTTGTTTTGCTGAGGTTTCCCGTGATAGTGAAGGGACGTTTGGAATTGTTGATTACACTAATTATGATGACATGAAGTATGCTATTCGGAAACTGGATGACACTGAGTTTAGAAATCCTTGGGCAAGAGCTTATATCAGAGTGAAGAAGTATGAGGGTAGTCGTTCTAGGAGCCGCAGCCGGAGTAGGAGCAGAAGCCCCAGCAGGAGTCGAAGTCCAAAAAGGGCTAGAAGGTCAAGATCTCGATCTCGATCAGCATCACCAATCAAATCTTCCAGGCCAAGATCACGTTCACGATCTGGATCTCCTCGCCAGGTGCTTTCAGGTAGTGGTTGAATTTCTGAAAAATGCCGGTAGTTTTTTGGAGTTATTTCCCCATTCTGGGCTGTATCCGCCTTATATAATATTTGAGCTGAACTAAATTGTTAAAAGGGAAAACCTAGGCTGTTGGTAATTTTTTTACCAGTTTGTTTATTGTGTTGTTTCGCTTAAACAAAGATGCTGGACTTTAGCTTAGCGCTAGCGGTTGTACCTTGTAAGAAACTACAAGTTACTTTTACAATCATTAGCTCTTTTTAAAGTAAATTTTTTATCTTGTGTTTCATATATTGAATTGTGCTTATTATAATTACAATAATATTTGTAGACCTTGTTTGGGTACAAATGTAGGAGAACTTTTTA 1992 0.3865 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKIPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGGGGGGGRFGISRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYEGSRSRSRSRSRSRSPSRSRSPKRARRSRSRSRSASPIKSSRPRSRSRSGSPRQVLSGSG 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g03518 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 177 IPR000504 GO:0003723
Pste2g03518 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Pste2g03518 249 SUPERFAMILY RNA-binding domain, RBD 6 184 IPR035979 GO:0003676
Pste2g03518 249 FunFam serine/arginine-rich splicing factor SR34A-like 2 112 - -
Pste2g03518 249 MobiDBLite consensus disorder prediction 190 249 - -
Pste2g03518 249 Gene3D - 2 111 IPR012677 -
Pste2g03518 249 MobiDBLite consensus disorder prediction 198 222 - -
Pste2g03518 249 Gene3D - 113 190 IPR012677 -
Pste2g03518 249 CDD RRM1_SF2_plant_like 8 79 - -
Pste2g03518 249 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 7 242 - -
Pste2g03518 249 MobiDBLite consensus disorder prediction 81 101 - -
Pste2g03518 249 FunFam serine/arginine-rich splicing factor SR34A-like 113 190 - -
Pste2g03518 249 CDD RRM2_SF2_plant_like 113 188 - -
Pste2g03518 249 SMART rrm1_1 114 183 IPR000504 GO:0003723
Pste2g03518 249 SMART rrm1_1 8 78 IPR000504 GO:0003723
Pste2g03518 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 191 IPR000504 GO:0003723
Pste2g03518 249 MobiDBLite consensus disorder prediction 223 249 - -
Pste2g03518 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g03518 Pste-Chr2 36554018 36559226 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g03518 9 175 Eukaryotic Initiation Factors Gene Family AT4G34110 24.855 8.55e-08 50.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g03518 2 36554018 36559226 Pste2g03518 2 36554018 36559226 ECH