Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g03517 GACAACAACATCAATTTGGGACGTTCTTCTCTGCTGCAAGGTCCAAAAAGTCAGTGAAGTGAAAACGGACGATCCGAAGAATATTACCTCCTTTCATCTATCTATAACATTATTCATCAGATCAGTTTGATCTTATGTCAATGAAGGATTTTTAGATAAACCCAGATTCGCAGAAAAACCTTAAAGCGGAGAAAAAAGGCAACGACTTTTCATTTCTAAGCAGAAAGTGATTATGGCGGTTGCGGAGAATGTTGGGGCCAAAATCGGTTCTTCGAGTCAGAGTTTGGACAACGGTGTAGTATCAGCGGATTCGAGCGAGGTTGAAAAATCGAAAACCAGAAGCGATCAGAATCTGAACAACGGTGTTTTCAACCATCAACAGCACCAAGAGAGAGTTCCCAGCACTATGTCAGTCCCTAACGGCAATTTCGGCTACAAGGCACAGATGCATCCAAATGGTGTGAACAATGATGGATATGGGATGAATGGGGTTATGAGTGGGGAGAATGGGGGTGAGAGTTTCAAACGTGATATGAGGGATTTGGAAGAACTTTTGTCAAAGTTGAACCCCATGGCTGAGGAGTTTGTGCCTCCGTCACTAGCCAATAATCATGGCTTCTTAGCTGGACCTAATGCTGGGTTTGGTTACGCTAACAATTTTATACTGCCTAATAACTATGGAAATACTAATGGCCAAACTAACAACAGAAGGAGGAAGAATGGCTACAATCCTGGGAAGCGGAGGGTGAATCATAAAATGGATATGGAGAAAAGAGAAGAGATGATTCGTAGGACTGTCTATGTGTCTGACATTGATCAACTGGTTACTGAAGAGCAGCTAGCAGCTCTCTTTCTTAACTGTGGTCAGGTTGTTGATTGCCGTGTATGCGGAGATCCTAATTCTATTCTTCGATTTGCCTTCATTGAGTTTACAGATGAAGATGGTGCAAGGGCTGCCTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCACTAAGAGTGCTACCTTCAAAAACTGCCATTGCGCCTGTTAATCCAACCTTTTTGCCTAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACAAATATTGACAAGAAGCTTACACAAGCAGATGTCAAGCACTTCTTTGAATCTATTTGTGGAGAGGTTCAACGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTGCATTGTGTGAAAATCCACTTCAATGATATGCATGCGATGAACATAGCTGGTGTTTTAAGTAAAGCTCTCAAACAAGATTTTACATTTTTTGCCATTGTAGTTTTTGCATTTATGTATCATCCGAGCCTTGTTAGTTTGGATTTCTCTTTTGCTGAGAGTGCAATTGCTGCTCTGAGCTGTAGTGGTGTGATTTTGGGGTCACTGCCTATAAGGGTAAGTCCATCAAAGACACCTGTTCGCCCTCGCGCTCCTCGTGCCCCCATGCACTGAATCATCCTTTCACATGTTTCCGGGATTGCTGCTGCCTGGAGATATATTTACATATATACATACATAGAAACAGATATATTCTAAGGTGCCTGTGGCGTTTTGTTGATACTTTTGACCTTGAGACTTGCAGTATGGTATCTTTGTTTCCTGTTGGGGTCATGAATTGTGTTTAGCTTGTAGAGTTGGATGGCGTTTTGAGGATCTCCCAGGCTTAAATTTATCATGGCTTCATCTTGCAAGGAGAGAATTTTATTGTTGGATTTTTCTAACATCTGGAATTTACTTAAAGAAACATGTTACAAAGCCTTTGTTTTAGTC 1819 0.4167 MAVAENVGAKIGSSSQSLDNGVVSADSSEVEKSKTRSDQNLNNGVFNHQQHQERVPSTMSVPNGNFGYKAQMHPNGVNNDGYGMNGVMSGENGGESFKRDMRDLEELLSKLNPMAEEFVPPSLANNHGFLAGPNAGFGYANNFILPNNYGNTNGQTNNRRRKNGYNPGKRRVNHKMDMEKREEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEDGARAALSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFALHCVKIHFNDMHAMNIAGVLSKALKQDFTFFAIVVFAFMYHPSLVSLDFSFAESAIAALSCSGVILGSLPIRVSPSKTPVRPRAPRAPMH 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g03517 422 MobiDBLite consensus disorder prediction 150 169 - -
Pste2g03517 422 Gene3D - 148 264 IPR012677 -
Pste2g03517 422 SMART rrm1_1 285 349 IPR000504 GO:0003723
Pste2g03517 422 SMART rrm1_1 188 258 IPR000504 GO:0003723
Pste2g03517 422 MobiDBLite consensus disorder prediction 9 28 - -
Pste2g03517 422 MobiDBLite consensus disorder prediction 37 56 - -
Pste2g03517 422 FunFam Polyadenylate-binding protein-interacting protein 11 151 264 - -
Pste2g03517 422 SUPERFAMILY RNA-binding domain, RBD 187 332 IPR035979 GO:0003676
Pste2g03517 422 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 106 415 - -
Pste2g03517 422 MobiDBLite consensus disorder prediction 1 56 - -
Pste2g03517 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 262 IPR000504 GO:0003723
Pste2g03517 422 CDD RRM2_CID8_like 280 411 IPR034825 -
Pste2g03517 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 331 IPR000504 GO:0003723
Pste2g03517 422 CDD RRM1_CID8_like 185 264 IPR034823 -
Pste2g03517 422 Pfam Ataxin-2 C-terminal region 108 122 IPR009818 -
Pste2g03517 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 332 IPR000504 GO:0003723
Pste2g03517 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 252 IPR000504 GO:0003723
Pste2g03517 422 Gene3D - 272 416 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g03517 Pste-Chr2 36532816 36539241 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g03517 186 331 Eukaryotic Initiation Factors Gene Family AT1G34140 24.161 3.75e-07 50.1