Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g03515 TTTACCATGTATCCTTGGGGATGCATTGCATGAAATGAAATGTATGATGGATGACATGGGCAGTTGTGGAAATTAAAGAAATTTTGGGTCATTTTTTTGTTTATTTCTTTGATACGTTCATCATCATCATCATCAAATTGGCAGGTTCTTCTCAGGAAGGTCCAAAAGTCAGTGCAGTGAAAACGGACGATCCGAAGAATACCCTTTTCATCTCTCTACCGTAATCATCCTCTTTTTCTTCAGTGGATTATAGTTCGTCCCGGCCAATGATCTTTTCAGTCTGATCTTACATCAATGGATTTTTTTTAAAGAGAACTCAGATTCACAGAGAAATCTGATTGCACAGGAACCATAAAAGACATAATTTTTATATCACTAAACAAGTAATTATGGCTGTTGCTGAGAATGTCGGGACCAAAGTTGGTTCTTCCAGTCAAAATTTGGACAACAGTGTAGTGTCATCTGACGCTGGCGAGGTTGAGAAATCTAAAACCAGAAATGGCCCCATCAACGGCGATCAGAAGCTAAACAACGGTGTGTTCAACCAGCAAGATAGAGTGCCTAGCACTATGTCAGTGCCCAATAACAATTATAACTACAAGGCACAAATGGGTCAGATGCACACAAATGGAGCGAACAATGATGGGTATGCGATGAATGGGGTCAGGACTGGGGACGATGGGGTGAGAGTTTCAAGCGTGACATGAGGGATTTGGAAGAGCTTTTGTCAAAGTTGAATCCCATGGCTGAGGAATTTGTGCCCCCATCACTAACCAATATTCATAGCTACCTACCTGGACCTACTGGTGCCGGTGCTGGATTTGGTTACCCTAATAATTTTGTATTGCTCAATAACTATGGTAATGCTAATGGTCAAACTAACAGAAGGAGGAAGAATGGCTATAACCATGGGAAGCGAAGGTTGAATCATAAAATAGATATGGAGAAAAGAGAAGAGATGATCAAGAGGACTGTTTATGTGTCTGACATTGATCAACTGGTTACTGAAGAGCAGTTGGCGGCGCTCTTTCTTAACTGTGGCCAGGTCGTTGATTGCCGTGTTTGTGGCGATCCTAATTCTATTCTCCGGTTTGCCTTCATTGAGTTTACAGATGAAGACGGTGCAAGGGCTGCGTTGAACCTGTCTGGAACCATGCTTGGGTATTACCCATTGAGAGTGCTTCCTTCAAAAACTGCTATTGCACCTGTTAATCCAACATTTTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGTTCAAGAACCATTTATTGCACAAATATTGACAAAAAGCTTACTCAAGCTGATGTCAAACACTTCTTTGAATCTATTTGTGGAGAGGTTCAACGGTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCTTTTGTTGAGTTCTCAATGGCTGAGAGTGCAATTGCAGCTCTAAGCTGTAGTGGGGTGATTTTGGGTTCACTGCCCATAAGGGTAAGTCCATCGAAGACACCAGTTCGGTCGCGCTCCTCGTACTTCCATGCACTGAATCAACTTTCCATGTTTCTGGGGTTGATTGCTGCTCTGAGATATATTTTACATATATACATACATAGAAACAGATATGTTCTAAGGAACATGTGGCATTTAGTTGGTACTCTTGTCCTCGTGTCTTTCAGTATGGTTACTTTGCTTCCCCTTGGGGGATTATGGGTTCTTTGTTTAGCTTGTAGAGTCGGCTGTTGATGACTTAATTTATGATGCACATTGTGATGTGTTGATCATGCAAGGAGAGAATTTTATGGTTGGATGTTTCTAACATCTTGGAATTTATTTTAAGAAACTTGTTACAAAGCCTTCGTTAGTCATGAAGTGTTTATCATGGATATTTAGTTAGATATTTGTCGTATGCCATATGAAATAGTGGC 1905 0.4105 MRDLEELLSKLNPMAEEFVPPSLTNIHSYLPGPTGAGAGFGYPNNFVLLNNYGNANGQTNRRRKNGYNHGKRRLNHKIDMEKREEMIKRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEDGARAALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFSMAESAIAALSCSGVILGSLPIRVSPSKTPVRSRSSYFHALNQLSMFLGLIAALRYILHIYIHRNRYVLRNMWHLVGTLVLVSFSMVTLLPLGGLWVLCLACRVGC 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g03515 339 Gene3D - 50 166 IPR012677 -
Pste2g03515 339 Gene3D - 173 269 IPR012677 -
Pste2g03515 339 Pfam Ataxin-2 C-terminal region 8 22 IPR009818 -
Pste2g03515 339 SMART rrm1_1 90 160 IPR000504 GO:0003723
Pste2g03515 339 SMART rrm1_1 187 258 IPR000504 GO:0003723
Pste2g03515 339 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 7 267 - -
Pste2g03515 339 FunFam Polyadenylate-binding protein-interacting protein 10 180 258 - -
Pste2g03515 339 SUPERFAMILY RNA-binding domain, RBD 177 269 IPR035979 GO:0003676
Pste2g03515 339 CDD RRM1_CID8_like 87 166 IPR034823 -
Pste2g03515 339 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 164 IPR000504 GO:0003723
Pste2g03515 339 SUPERFAMILY RNA-binding domain, RBD 61 166 IPR035979 GO:0003676
Pste2g03515 339 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 262 IPR000504 GO:0003723
Pste2g03515 339 FunFam Polyadenylate-binding protein-interacting protein 11 52 166 - -
Pste2g03515 339 CDD RRM2_CID8_like 182 263 IPR034825 -
Pste2g03515 339 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 154 IPR000504 GO:0003723
Pste2g03515 339 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 255 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g03515 Pste-Chr2 36501918 36507112 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g03515 91 257 Eukaryotic Initiation Factors Gene Family AT1G34140 25.146 6.41e-11 61.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g03515 2 36501918 36507112 Pste2g03515 2 36501918 36507112 ECH