Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g03499 ATACGTGTGCTTGTGAGGGTGACAACTGACAAGCAGGCAGTTCCTTCTACAAACAAAATAGTACATGGCCGATAGATAGCCTACCAGTAAACGAATTGCAAGATAATTTCTTCCTACTTAACAAAAGATAGTAAGAGCCACACGGTATCTTATCCCATAGGTCACAATGATCCTTCCATCAGAAGTTGCAATAACGTGATAGAAATGGCTTTGAGATACTTTCTTTAATGGCTAGCTATATATTCTGCACCTGATCCCTCCTCACCAGACTTTTAAATCACATAATTCTTTTTTATTTGTTGGTGGCGAACAGATTGTGTATCCAATTCCAAATTCACCCATAGAATACTTCCTTTCTTACTAGCCATATGATGGAGGGAGAAGAGAATATTCAAGCATCAAAAGGAAAAAATGTTGAAAGCTTCACCTGCTTGGAGGCACCAAGGAAGAAAAACAAGAAGATAGAAAACAAGAGGAGGTTTAGTGACGAACAGATACGATCACTAGAATGCATATTTGAGTCAGAGTCAAAGCTTGAGCCAAGGAAGAAGATGCAATTGGCAAGAGATCTTGGCCTGCAGCCCCGCCAAGTTGCCATATGGTTCCAAAACAGAAGGGCAAGGTGGAAATCAAAACGCATAGAGCAAGAATACAGGAAACTCAAAGATGAATATGACAATTTAGCATCAAGGTTTGAGTCCCTAAAGAAAGAGAAGGAGTCTTTGCAATTAGAGTTGCAGAAGCTAAGTGATTCGGTGGTAACATCTCATGATGTTGGAAGGGAAGACAAGGCTGGAAAAGAAAACAGCATAGAAGATGGTGGTTCAGGTAGTGGATACAGCTGTTGGAAGCCTGAACCAAAACCAAGGTTTTCAAATGAGGGCTTGGAGGACAGAATAGGTGTGTACTCAGATGATCAAAATGAGAATAGCATCATAAAGGGTGAGAAATCTGAGGACAAGGAACACCAACTTCTCAGAATGGATGATCAGGCAGATATGCCACTAGCATCACTTGAAAAATGGTATAGTAGTGTGGACCCAAGTGGCATCTTGGACCAGTCTTGTAGCAGCTCTCAATGGTTAGATTTCTGGACTTGAAAAGGGAACCACAGTCTGAGTTGCATGTGTGATGTTTGTTTCCTCCGAGATGGAACAAAAATTGGTTGGTGCTGCTGGTAGGCACTTGTGCTGTCAACAGGTCAAAACTCAACATTCCAGCCTAGCAGGATGTCCAAAGTCCAATAGACCAAGAAACTCGAAGGAAGTTTTGTAGGCTTGATTTGATAGGGAGAGAATTAAGACAGCCTCACTCAATTCAATTGTGTAGAGATTTGGCAAAAGAAATAATGTGCTGTTTGTTCATGCTTGCATGCCTTTCCCATCCCTTTGCGTGTGTTCTTTCTTCTTTTTCTTTTTCCTTTTCCCACTTCAAGGGTTTAATCTGAAACCTCTTTATATTCTTAAAGGGACCTCTCTTTTATCACTTTAGCTTATGCCCATACTAACAAGCACGATTTTTATAGGGACACACAAAAAAGGTGTGAATAAGATATTGCTGGAATTCATGAACCAACGAATGTGTTAATTTCATTTCTTA 1599 0.404 MMEGEENIQASKGKNVESFTCLEAPRKKNKKIENKRRFSDEQIRSLECIFESESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDNLASRFESLKKEKESLQLELQKLSDSVVTSHDVGREDKAGKENSIEDGGSGSGYSCWKPEPKPRFSNEGLEDRIGVYSDDQNENSIIKGEKSEDKEHQLLRMDDQADMPLASLEKWYSSVDPSGILDQSCSSSQWLDFWT 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g03499 243 Pfam Homeodomain 35 87 IPR001356 GO:0003677
Pste2g03499 243 MobiDBLite consensus disorder prediction 132 147 - -
Pste2g03499 243 FunFam Homeobox-leucine zipper protein ATHB-7 16 89 - -
Pste2g03499 243 CDD homeodomain 35 90 IPR001356 GO:0003677
Pste2g03499 243 Gene3D - 24 98 - -
Pste2g03499 243 Pfam Homeobox associated leucine zipper 89 128 IPR003106 GO:0006355|GO:0043565
Pste2g03499 243 Coils Coil 81 129 - -
Pste2g03499 243 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 27 208 IPR045224 GO:0003700
Pste2g03499 243 MobiDBLite consensus disorder prediction 167 199 - -
Pste2g03499 243 SUPERFAMILY Homeodomain-like 24 89 IPR009057 -
Pste2g03499 243 ProSiteProfiles 'Homeobox' domain profile. 29 89 IPR001356 GO:0003677
Pste2g03499 243 MobiDBLite consensus disorder prediction 130 199 - -
Pste2g03499 243 SMART HOX_1 32 93 IPR001356 GO:0003677
Pste2g03499 243 ProSitePatterns 'Homeobox' domain signature. 64 87 IPR017970 GO:0000981|GO:0006355
Pste2g03499 243 PRINTS Lambda-repressor HTH signature 60 69 IPR000047 GO:0003677
Pste2g03499 243 PRINTS Lambda-repressor HTH signature 69 85 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g03499 Pste-Chr2 36164107 36165814 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g03499 1 243 Homeobox Transcription Factor Family AT2G46680 41.111 2.23e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pste2g03499 Homeodomain 2.4e-17 CL0123