Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g03472 GCGAAGGGAAGGTGCTGTTGCGTTTTGCGTTCACAACACAAGCCTGCGCAGTGTTCTCCCAATCTCGTTTCTTGGGCCATAGCCATCACTAATACCGATGAATGTGTCCTCTTTTCCTGTTTTACCCTTTCCGACCCTCTTATTTTTTTAACACTCAAAACGGGTTTTCTCCTTCCGGCTTGTTCGCTTTTTTCACTCGCACATATATATTCCACTTCGTATTTCTGCTTCTGCTCCTCTCATCGCAACTTGCAACTCGCAACACTTTGGATGCTATGATTCTGCTTCTTCTTCTTCTTCTTCTTCCATCCTCCTAACACACTATCTTATTCTCATCATCCGCACAATCCATTTCATGATCTGGGTGGCTTCGTCTGGAGAGAGATAAAAAATTGGATTTTGGCACTTTTCCGGGCTTAAAATGTTGCTTCTTTGAGGGGGGGTTTTCATGGGTTGAACTCGGAGAATCATGGGTAGCTTCAGCGAAGACGAGGAATGTCGGTTTTTCGATGCACGAGAGGATGTTGTGTCCATTGCGGATGATGAAGGAGTATCCAATAGTTTTGATTATGAAGTGTGGATTCGTAGTCCAAGGAGTGTTAGAGAGCGTAGAAACAAATTTATGACGAAGATGGGACTCGGTAGTGTGGATTTGTTGATTGCCCTAGAAAATGAAAATTCAGTAGATGTGGATAGTGTTGAGTGTGAAGAGGTGATGGATAGAGTCAAAGTTACCAGTGGGGCTGTGACCCGAAATTGTGGAGTAGAAGAGGAATTCTGTTCAACCCGGACATCAATGTCTTGTTGGCAAGGCGAGAATTCTTGTAAGGAGTTTGGTTTAGTGGATAACTGGGGGTGTCAAGATGAGAATTGGGAGGGTAATGTGGATGAGGAGGGGCAGGAGCCTAGGGAGATGAGTGATGAAAGAGATCTGGATTCAGATCGGTTGGTGGTTGTGCAGGAACATAGGGATTCGGAGAATGGCTTTGGGGTTGAGGCATCTCCTTTCCGAGGGAGGGAGGTTGAGGAAATGGATGCCAATGGTTGTCCTAGGAGGACGAGCAGGGATAGAAAGGGTTGGTTCAGAAGATTGCGGTCAATAACGTGCATGATGGATAGGCGTGAGGAAGGTAGAGAAGAAGGTCTTGGTGAAATCTCAGGTTGTAGGCTTCAGAGGGTTAAGGTCCGTCAGTCCAAGAAGCAAATGAAGGAACTCTCAGCCCTTTACGTTAGGCAAGATATCCAAGCACATGAAGGTTCTATTTTGACCATGAAGTTTAGTCCTGATGGACAGTATCTTGCCAGTGGTGGTGAAGATGGGGTCGTGCGCTTGTGGCAAGTGGTTGAGGAGGATAGATGTAATGAAGTGGACATTCCAGCCATTGATCCATCCTGCATTTATTTTACTGTGAATAATCTCTCAGAATTGACCCCACTGTTTATGGAAAAGGAAAAATTAAGCAAACTGAAGAACCTGAAAAAAACATCAGATTCTTCTTGCATTGTTTTTCCTCCCAAAATTTTTCGGTTATTGGAGAAACCATTGCATGAGTTTCGGGGACACAAAGGAGAAGTTTTGGATCTTTCCTGGTCAAACAATAATTATCTTCTGTCATCTTCAGTTGACAAAACTGTCCGTCTATGGCAAGTGAATCAAGACCATTGCTTGAAAGTTTTCTCACACAGTAATTATGTGACATGCATACAATTCAATCCTGTGGATGATAATTATTTCATTAGTGGATCTATAGATGGAAAAGTGCGCATCTGGACAATTCCTGATTGCCATGTTGTTGATTGGATCGATATCAAAGATATAGTGACTGCAGTGTGTTATCGGCCTGATGGGCAGGGAGGAATCATTGGCTCTTTGGCTGGCAATTGTCGGTTTTATAATGTATTAGAAAATCGCTTGCAGTTAGATTCCCAACTATGCCTTATTGGTAAAAAGAAACTTCCTGGCAGAGGGATAACTGGGTTTCAGTTTCTTCCACAAGATTCTAACAAAGTTATGGTCTCCTGTGCTGACTCACAAGTCAGAATCCTTGACGGGCTTAATGTGATTGGCAAGTACAAAAGCCTTAGCACAGGAAGCCCTACGTGTGCATCATTTACTTCTGATGGGAAACATATACTATCAGCATGTGAGGACTCTAACGTATATCTCTGGAATGTTAGTCAGGAAGAGTCTATTACCGGGAAAGCTAAGAAGATTACGTCTTGTGAGCGGTTTTTCTCAAATGCATCCGTAGCAGTACCTTGGCTTGGTTTGAAATCTCAAAATATTAAAAACGAACATCAATTGGATGTCTTGGAAAGATCATCTCAAGTTATACATCACAATCCACCTGCTTCTTTCTCTCTGAGCCAAGAGTTTTTCTTGGAGTCTTTTCCAAAGGGATCTGCAACTTGGCCTGAGGAGAAGCTTCCTGTCTCAAGCTCCAAGGCTAAAACATCAGTGTTGCGTAAATCTGATTACAAGTTCTTGAAATCTTCTTGCAAGAGTACCTCCTCTGCTCATGCGTGGGGTATGGTCATTGTCACTGCTAGCTGGGATGGTAGGATAAAATCATTCCATAATTATGGGCTACCTATACCCGTTTGA 2605 0.4319 MGSFSEDEECRFFDAREDVVSIADDEGVSNSFDYEVWIRSPRSVRERRNKFMTKMGLGSVDLLIALENENSVDVDSVECEEVMDRVKVTSGAVTRNCGVEEEFCSTRTSMSCWQGENSCKEFGLVDNWGCQDENWEGNVDEEGQEPREMSDERDLDSDRLVVVQEHRDSENGFGVEASPFRGREVEEMDANGCPRRTSRDRKGWFRRLRSITCMMDRREEGREEGLGEISGCRLQRVKVRQSKKQMKELSALYVRQDIQAHEGSILTMKFSPDGQYLASGGEDGVVRLWQVVEEDRCNEVDIPAIDPSCIYFTVNNLSELTPLFMEKEKLSKLKNLKKTSDSSCIVFPPKIFRLLEKPLHEFRGHKGEVLDLSWSNNNYLLSSSVDKTVRLWQVNQDHCLKVFSHSNYVTCIQFNPVDDNYFISGSIDGKVRIWTIPDCHVVDWIDIKDIVTAVCYRPDGQGGIIGSLAGNCRFYNVLENRLQLDSQLCLIGKKKLPGRGITGFQFLPQDSNKVMVSCADSQVRILDGLNVIGKYKSLSTGSPTCASFTSDGKHILSACEDSNVYLWNVSQEESITGKAKKITSCERFFSNASVAVPWLGLKSQNIKNEHQLDVLERSSQVIHHNPPASFSLSQEFFLESFPKGSATWPEEKLPVSSSKAKTSVLRKSDYKFLKSSCKSTSSAHAWGMVIVTASWDGRIKSFHNYGLPIPV 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g03472 711 PANTHER WD REPEAT DOMAIN 44 5 708 IPR040324 -
Pste2g03472 711 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 258 291 - -
Pste2g03472 711 PRINTS G protein beta WD-40 repeat signature 422 436 IPR020472 -
Pste2g03472 711 PRINTS G protein beta WD-40 repeat signature 277 291 IPR020472 -
Pste2g03472 711 PRINTS G protein beta WD-40 repeat signature 380 394 IPR020472 -
Pste2g03472 711 ProSiteProfiles Trp-Asp (WD) repeats profile. 258 291 IPR001680 GO:0005515
Pste2g03472 711 MobiDBLite consensus disorder prediction 140 155 - -
Pste2g03472 711 SMART WD40_4 396 435 IPR001680 GO:0005515
Pste2g03472 711 SMART WD40_4 355 393 IPR001680 GO:0005515
Pste2g03472 711 SMART WD40_4 438 476 IPR001680 GO:0005515
Pste2g03472 711 SMART WD40_4 487 527 IPR001680 GO:0005515
Pste2g03472 711 SMART WD40_4 251 290 IPR001680 GO:0005515
Pste2g03472 711 SMART WD40_4 528 568 IPR001680 GO:0005515
Pste2g03472 711 ProSiteProfiles Trp-Asp (WD) repeats profile. 544 577 IPR001680 GO:0005515
Pste2g03472 711 Gene3D - 492 703 IPR015943 GO:0005515
Pste2g03472 711 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 402 436 - -
Pste2g03472 711 Gene3D - 221 350 IPR015943 GO:0005515
Pste2g03472 711 MobiDBLite consensus disorder prediction 136 155 - -
Pste2g03472 711 ProSiteProfiles Trp-Asp (WD) repeats profile. 402 436 IPR001680 GO:0005515
Pste2g03472 711 Pfam WD domain, G-beta repeat 357 392 IPR001680 GO:0005515
Pste2g03472 711 Pfam WD domain, G-beta repeat 544 568 IPR001680 GO:0005515
Pste2g03472 711 Pfam WD domain, G-beta repeat 399 434 IPR001680 GO:0005515
Pste2g03472 711 Pfam WD domain, G-beta repeat 259 289 IPR001680 GO:0005515
Pste2g03472 711 ProSitePatterns Trp-Asp (WD) repeats signature. 555 569 IPR019775 -
Pste2g03472 711 ProSiteProfiles Trp-Asp (WD) repeats profile. 362 402 IPR001680 GO:0005515
Pste2g03472 711 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 362 395 - -
Pste2g03472 711 Gene3D - 351 491 IPR015943 GO:0005515
Pste2g03472 711 SUPERFAMILY WD40 repeat-like 254 701 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g03472 Pste-Chr2 35575865 35579897 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g03472 258 426 U-box Gene Family AT2G33340 22.843 6.66e-07 50.4