Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g03439 GCACAACACAATCTAAACTAAACCTCGGTAGAGAGAGACAACGAAGAAAAGAACCTGTTGGACACCAGAACGGAGTTTTGGTTTTATAGGAATCCTCCCATTCATCGATCCACGTCCATACCCGTCTTCCTTCTCCTATTCTCCTTCTCTTCTTTTTTCCAACAGTGAGAGAAGAACAGAGAGAATTGAAGGAAGAAGGTTCAGAAAGGGGAATACCCAGGTAATCAATTCGGTGAAATTTCGGATTTTGATAACTGGGTGTTTCTTTTTACCTTCACTGGTCGAAGGGTTTTGGTGAGTGGATGGACTTGGAAAGCGTTGAGTGTGTGTCTTCCTCGGATGGAATGGACGAGGATGAGATCCACGCCAACCATCACCACTCTGAGTTTTCTTCCACAAAGCCTCGCAATGGAACCACTAATAACATTAATTCTGTGGGCCCCACCGCCATTGCTCCGGCAACCAGCGTCCATGAGTTGCTCGAATGTCCTGTATGTACTAATTCAATGTATCCTCCAATTCATCAGTGTCACAACGGCCACACACTGTGTTCCACATGCAAAACAAGGGTGCACAACCGATGTCCCACTTGTAGACAAGAGCTCGGAGATATTAGGTGTCTGGCACTAGAGAAGGTGGCTGAATCACTTGAGTTACCTTGCAAGTACTACACCCTTGGATGTCCAGAAATCTTTCCATACTACAGCAAGCTTAAGCATGAGACAGTATGTAATTTTAGACCATATAGCTGTCCTTATGCTGGGTCGGAGTGTTCTGTTGTCGGCGATATTCCTTTTCTAGTTGCTCATTTGAGGGACGATCATAAAGTGGACATGCACACTGGCTGCACATTCAACCACCGTTATGTGAAATCAAATCCACGTGAAGTAGAAAATGCAACTTGGATGCTCACAGTATTTCATTGTTTTGGTCAATATTTCTGCCTTCACTTTGAAGCCTTTCAGCTTGGCATGGCACCTGTTTATATGGCATTCCTTCGTTTTATGGGCGATGAGAATGAAGCTCGGAATTATAGCTATAGCCTAGAGGTTGGGGCCAATGGTAGAAAACTCATTTGGGAGGGTACACCACGAAGTGTTCGGGATAGTCACCGTAAGGTTAGGGATAGTCATGATGGGCTCATTATTCAAAGAAATATGGCCCTATTTTTCTCTGGTGGGGATAGAAAGGAGCTGAAACTCAGAGTTACAGGAAGAATATGGAAGGAACAACAGAGTTCGGATGCTGCGGTGTGCATGCCAAATCTCTGTAGTTGACATGTTATTTGAAGGGCATTTTTATCATTTGTGTGTTTGGGACACTCCTTTGAGCTAATATTTATACCAACTTCGTGCTTGTTGTAACAGATTTAAGGCACTAAGGTGGCTCTTAAATGTCATTTTTCATAATCTGTGTAATAAACAAGATTTTCTTACTCTCAAATTTGTTTGATTAAAATTCGAATTATTTCTTGATCTGAACATCGGGGTTAAGCCGGTTGCCAGAGCAGAGATAATCACCAAAAATGTAATGTAAATCAGAACTAGCTG 1550 0.4277 MDLESVECVSSSDGMDEDEIHANHHHSEFSSTKPRNGTTNNINSVGPTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYTLGCPEIFPYYSKLKHETVCNFRPYSCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQSSDAAVCMPNLCS 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g03439 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 168 IPR013083 -
Pste2g03439 324 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 37 309 - -
Pste2g03439 324 Pfam Seven in absentia protein family 104 303 IPR018121 GO:0005737|GO:0006511|GO:0007275
Pste2g03439 324 CDD RING-HC_SIAHs 60 98 - -
Pste2g03439 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 114 IPR013083 -
Pste2g03439 324 FunFam E3 ubiquitin-protein ligase SINAT3 11 113 - -
Pste2g03439 324 SUPERFAMILY TRAF domain-like 115 307 - -
Pste2g03439 324 CDD Sina 176 304 - -
Pste2g03439 324 SUPERFAMILY RING/U-box 54 102 - -
Pste2g03439 324 FunFam E3 ubiquitin-protein ligase SINAT5-like 171 303 - -
Pste2g03439 324 MobiDBLite consensus disorder prediction 24 46 - -
Pste2g03439 324 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 169 303 IPR008974 GO:0005515
Pste2g03439 324 ProSiteProfiles Zinc finger RING-type profile. 62 98 IPR001841 -
Pste2g03439 324 MobiDBLite consensus disorder prediction 32 46 - -
Pste2g03439 324 FunFam E3 ubiquitin-protein ligase SINAT3 114 170 - -
Pste2g03439 324 ProSiteProfiles Zinc finger SIAH-type profile. 115 175 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g03439 Pste-Chr2 35043598 35046859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g03439 10 310 C3H Transcription Factor Family AT2G41980 72.757 4.40e-164 457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g03439 2 35043598 35046859 Pste2g03439 2 35043598 35046859 ECH