Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pste2g03388 | ATGGTGTTCCAACCAATACCCTTGTCCCTCCAAACCGTACTCAAACGTGGCTTCACCCCAACTTCAAAACCCATCAACCACTTCCTCCTCTTCCTCTTCCACCACCACAAATACAACTTCATCACCCACTTCTTCTCCCAGTTGAAATCCAATGATGCCCCCATCAACAATCGAACCTTCTCCCTCTTCACATGGGCACTTCTCAAATCCCAGAAGTTCGAAGAAGCAGAACAATTCATGCACACCAACACGCACACCACTCAGTCCTCCATGTGGGACTCCCTCATCCAAGGCCTCTGTGCAAAACAGCAAGACCCCAAGAAAGCACTCTCCGTTTTGCAATGCTGCGTGAGGGACCGTGGCGTGGTACCTTCTTCCTTCACTTTTTCTTTAGTAGTTCACAAATTGAGATCAAAGGGGTTAATGGGTAGGGCCATTGAGGTGCTGGAGTTGATGGGTGAGGATAGTGTTAAGTACTCTTTTGATGATTTTGTATGTAGTTCTGTTATTTCTGGGTTTTGTAGGGTGGAAAAACCGGAACTTGCTTTCGAGTTTTTTAAGAATGTTACGGATTGTGGCAGGCTGAGGCCAAATGTGGTAACTTGCACGGCTCTTGTGGGGGCTCTTTGTAAGATGGGGAGGGTTGGCGAAGTGTTTGGTTTGGTGAAGTGGATGGAGAGGGAAGGCTTGGGTTTGGATGTTGTTTTGTATAGTGCTTGGGCATGTGGTTATGTTGAGGAGAAGGTTTTGGGAGAGGTTTTTGGGAGGATGAAGGAAATGGTGGAGAAGGGTATAGGTCATGATTTTGTGAGTTATACTGTGCTTGTAGATGGGTTTTCCAAGCTAGGTGATGTGGATAAGTCGCTTACTTTCCTGGCTAAAATGATAAAAGAAGGTCATAGACCTAATAAGGTTACATATAGTGCAATTATGTCTGCATATTGTAAGAAGGGTAAGGTGGAGGAGGCATTTGGTGTTTTTGAGAGCATGAAGGGTTTGGGAATTGAATTGGATGAATATGTGTTTGTAATTTTGATTGACGGATTTGGACGGCAAGGGGATTTCAACAAGGTGTTTGGTCTTTTTGAGGAAATGGAGAGGAGCGGGATTAGTCCTAGTGTTGTTGCATACAATGCTGTTGTGAATGGTTTGTCCAAGCATGGTAGGACATCTGAAGCAGATGAGTTATCGAAAAATGTTGCTAAGGATGTGATTACATACAGCACGTTGTTGCATGGGTATACTGAAGAAGGGAATATTCCGGGGATATTGCAAACGAAGAGGCAAATAGAAGAAGCAGGAATTTCTATGGATGTTGTGATGTGTAATGTACTGATCAAAGCACTGTTTATGATGGGGACTTTTGAAGATGTTTATGCACTTTACAAAGGAATGCCTGAAATGGATCTGGTTCCTAATTCAGTGACTTACTGCACAATGATTGATGGGTATTGCAAGGTAGGTAAAATTGACAAGGCACTTGAGGTATTTGATGAATTTAGAAAGACTTTGATCATTTCACATGTATGCTATAATAGTATCATTAATGGGCTTTGCAAGAATGGTATGGCAGAAATGGCCATTGAGGTATTACTGGAACTCAATCATGAAGGTCTTGAGTTGGATATAGGTACATTGAGGATGTTAATAAAGACAGTTTTTGAAGAAAACAATACAAAAGAGGCTCTAGATTTAGTTTACAGAATTGAAGGTTTGGGACCAGACATATATAGTGCAGTATGTAACGAATCTGTCTTTTTTTTATGTCAAAGTGGATTACTTGATGATGCAAATCATATGTGCTTGATGATGAAAAAGAAAGGCTTATCTGTCACATGCAAGTCTTATGATTTGATTTTGAGAGGGAATCTTATTAATAGGAATAGGGAGCAAATTTTGCCTCTCTTGAATAGCTTCCTGAAAGAATATGGTCTAGTTGAACCAATGGTACAACGGATATTTGCATGCTACCTCTGTCTAAAAGATGTCAATAGTGGCCTTCAATTTCTTGAAAAAACAGTGGATTACTCCTCAGCAGTCACTTTTCCTGCATCTATTCTCAAGATTCTCATAAAGGAAGGTAGAGTTTTGGATACATATAAGCTTGTCACAGAGGCTCAAGATAATTTACCAGTCATGCATGTTGATTATGAAATTGTGATTGATGGCTTGTGCAAGGGAGGGTATCTCAGTAAAGCATTGGATCTCTGTGCCTTTGTTGAAAAGAAGGGGTTGAATTTAAACATAGTCATATATAATTCAATTATAAATGGATTGTGCCATGAGGGATGTTTTATTGAAGTATTTCGGCTATTGGATTCATTAGAGAAGCTTAATTTGATACCATCTGAAATAACTTATGCTACAGTAATTTATGCTTTATGTAGGGAGGGATATTTGCCAGATGCAGATCATGTTTTCAGGAAAATGATCCTCAAAGGCTTTCAGCCAAAAGTACAAGTTTACAATTCATTGCTTGATGGCATTTCTAAGTTTGGTCAATTAGAAAAGGCATTTGAGCTTCTAAATGATATGGAGACAAAATATATTGAGCCTGACAGTCTGACTGTTAGTGCTGTAATTAATTGCTATTGCCAAAAGGGTGACATGCAAGGAGCTCTTGAATTCTATTATAAGTTCAAGAGGAAGGATATTTCACCTGATTTTTTTGGGTTCTTGTATTTGATAAGAGGTTTATGTACCAAAGGAAGAATGGAAGAAGCCAGGAGTGTCTTGAGAGAAATGCTCCAATCCAAGAATGCGGCTGAGTTAATTAACATTGTCAACAAGGAGGTTGATACTGAGTCAATAAGTGATTTCCTTGCCACTTTGTGTGAGCAAGGAAGGGTTCAAGAAGCTGTTACTGTTCTTAATGAGATTGCATGTATACTTTTTCCTGTTCGAAGGTTGTCGACTTATAATCAAGGATTCCATAAAGGACAGAAGATTTATGAATGGAAGGATTTTGGATCAAAATCTTCAAGCATTATACCTTCCTCTGGCAAAAGTGGTTTGAATCTTGAATCTTGTGATGACATAGATGTCAAGAATCTCACAACAAATAATGGTGGTGATATGACAAGATCCCAGCTGCATGGCTTTGACTTCTATTATTCTAGAATCGCTGCACTTTGTGCTAAAGGGGAGCTGCAGAAAGCAAATCAATCAGCGAAAGAAATGCTTTCTGACTTAACAGAGTCTATGAGCTGA | 3210 | 0.3963 | MVFQPIPLSLQTVLKRGFTPTSKPINHFLLFLFHHHKYNFITHFFSQLKSNDAPINNRTFSLFTWALLKSQKFEEAEQFMHTNTHTTQSSMWDSLIQGLCAKQQDPKKALSVLQCCVRDRGVVPSSFTFSLVVHKLRSKGLMGRAIEVLELMGEDSVKYSFDDFVCSSVISGFCRVEKPELAFEFFKNVTDCGRLRPNVVTCTALVGALCKMGRVGEVFGLVKWMEREGLGLDVVLYSAWACGYVEEKVLGEVFGRMKEMVEKGIGHDFVSYTVLVDGFSKLGDVDKSLTFLAKMIKEGHRPNKVTYSAIMSAYCKKGKVEEAFGVFESMKGLGIELDEYVFVILIDGFGRQGDFNKVFGLFEEMERSGISPSVVAYNAVVNGLSKHGRTSEADELSKNVAKDVITYSTLLHGYTEEGNIPGILQTKRQIEEAGISMDVVMCNVLIKALFMMGTFEDVYALYKGMPEMDLVPNSVTYCTMIDGYCKVGKIDKALEVFDEFRKTLIISHVCYNSIINGLCKNGMAEMAIEVLLELNHEGLELDIGTLRMLIKTVFEENNTKEALDLVYRIEGLGPDIYSAVCNESVFFLCQSGLLDDANHMCLMMKKKGLSVTCKSYDLILRGNLINRNREQILPLLNSFLKEYGLVEPMVQRIFACYLCLKDVNSGLQFLEKTVDYSSAVTFPASILKILIKEGRVLDTYKLVTEAQDNLPVMHVDYEIVIDGLCKGGYLSKALDLCAFVEKKGLNLNIVIYNSIINGLCHEGCFIEVFRLLDSLEKLNLIPSEITYATVIYALCREGYLPDADHVFRKMILKGFQPKVQVYNSLLDGISKFGQLEKAFELLNDMETKYIEPDSLTVSAVINCYCQKGDMQGALEFYYKFKRKDISPDFFGFLYLIRGLCTKGRMEEARSVLREMLQSKNAAELINIVNKEVDTESISDFLATLCEQGRVQEAVTVLNEIACILFPVRRLSTYNQGFHKGQKIYEWKDFGSKSSSIIPSSGKSGLNLESCDDIDVKNLTTNNGGDMTRSQLHGFDFYYSRIAALCAKGELQKANQSAKEMLSDLTESMS | 1069 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pste2g03388 | 1069 | Gene3D | Tetratricopeptide repeat domain | 800 | 960 | IPR011990 | GO:0005515 | |
| Pste2g03388 | 1069 | Gene3D | Tetratricopeptide repeat domain | 10 | 155 | IPR011990 | GO:0005515 | |
| Pste2g03388 | 1069 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 783 | 817 | IPR002885 | - | |
| Pste2g03388 | 1069 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 338 | 372 | IPR002885 | - | |
| Pste2g03388 | 1069 | Pfam | Pentatricopeptide repeat domain | 398 | 448 | IPR002885 | - | |
| Pste2g03388 | 1069 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 303 | 337 | IPR002885 | - | |
| Pste2g03388 | 1069 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 818 | 852 | IPR002885 | - | |
| Pste2g03388 | 1069 | Coils | Coil | 1047 | 1067 | - | - | |
| Pste2g03388 | 1069 | NCBIfam | pentatricopeptide repeat | 785 | 817 | IPR002885 | - | |
| Pste2g03388 | 1069 | NCBIfam | pentatricopeptide repeat | 856 | 888 | IPR002885 | - | |
| Pste2g03388 | 1069 | NCBIfam | pentatricopeptide repeat | 895 | 918 | IPR002885 | - | |
| Pste2g03388 | 1069 | NCBIfam | pentatricopeptide repeat | 750 | 783 | IPR002885 | - | |
| Pste2g03388 | 1069 | NCBIfam | pentatricopeptide repeat | 305 | 339 | IPR002885 | - | |
| Pste2g03388 | 1069 | NCBIfam | pentatricopeptide repeat | 270 | 303 | IPR002885 | - | |
| Pste2g03388 | 1069 | NCBIfam | pentatricopeptide repeat | 440 | 473 | IPR002885 | - | |
| Pste2g03388 | 1069 | NCBIfam | pentatricopeptide repeat | 341 | 374 | IPR002885 | - | |
| Pste2g03388 | 1069 | NCBIfam | pentatricopeptide repeat | 509 | 542 | IPR002885 | - | |
| Pste2g03388 | 1069 | NCBIfam | pentatricopeptide repeat | 821 | 853 | IPR002885 | - | |
| Pste2g03388 | 1069 | NCBIfam | pentatricopeptide repeat | 475 | 502 | IPR002885 | - | |
| Pste2g03388 | 1069 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 88 | 124 | IPR002885 | - | |
| Pste2g03388 | 1069 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 403 | 437 | IPR002885 | - | |
| Pste2g03388 | 1069 | Pfam | PPR repeat | 165 | 191 | IPR002885 | - | |
| Pste2g03388 | 1069 | Pfam | PPR repeat | 270 | 299 | IPR002885 | - | |
| Pste2g03388 | 1069 | Pfam | PPR repeat | 717 | 744 | IPR002885 | - | |
| Pste2g03388 | 1069 | Pfam | PPR repeat | 200 | 230 | IPR002885 | - | |
| Pste2g03388 | 1069 | Pfam | PPR repeat | 375 | 396 | IPR002885 | - | |
| Pste2g03388 | 1069 | Gene3D | Tetratricopeptide repeat domain | 661 | 799 | IPR011990 | GO:0005515 | |
| Pste2g03388 | 1069 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 853 | 887 | IPR002885 | - | |
| Pste2g03388 | 1069 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 473 | 507 | IPR002885 | - | |
| Pste2g03388 | 1069 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 438 | 472 | IPR002885 | - | |
| Pste2g03388 | 1069 | Pfam | PPR repeat | 884 | 915 | IPR002885 | - | |
| Pste2g03388 | 1069 | Pfam | PPR repeat | 469 | 499 | IPR002885 | - | |
| Pste2g03388 | 1069 | PANTHER | PPR_LONG DOMAIN-CONTAINING PROTEIN | 11 | 239 | - | - | |
| Pste2g03388 | 1069 | Gene3D | Tetratricopeptide repeat domain | 504 | 572 | IPR011990 | GO:0005515 | |
| Pste2g03388 | 1069 | Gene3D | Tetratricopeptide repeat domain | 400 | 503 | IPR011990 | GO:0005515 | |
| Pste2g03388 | 1069 | Gene3D | Tetratricopeptide repeat domain | 225 | 330 | IPR011990 | GO:0005515 | |
| Pste2g03388 | 1069 | Gene3D | Tetratricopeptide repeat domain | 156 | 224 | IPR011990 | GO:0005515 | |
| Pste2g03388 | 1069 | Gene3D | Tetratricopeptide repeat domain | 331 | 399 | IPR011990 | GO:0005515 | |
| Pste2g03388 | 1069 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 748 | 782 | IPR002885 | - | |
| Pste2g03388 | 1069 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 198 | 232 | IPR002885 | - | |
| Pste2g03388 | 1069 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 888 | 922 | IPR002885 | - | |
| Pste2g03388 | 1069 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 268 | 302 | IPR002885 | - | |
| Pste2g03388 | 1069 | Pfam | PPR repeat family | 748 | 796 | IPR002885 | - | |
| Pste2g03388 | 1069 | Pfam | PPR repeat family | 817 | 866 | IPR002885 | - | |
| Pste2g03388 | 1069 | Pfam | PPR repeat family | 509 | 552 | IPR002885 | - | |
| Pste2g03388 | 1069 | Pfam | PPR repeat family | 302 | 349 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pste2g03388 | 579 | 988 | Glycosyltransferase | AT1G05670 | 25.219 | 7.02e-32 | 132 |