LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste2g03385	TGCATTTTCTTCTCACTCGGCCACCTTTTTTACTGCTGGTGATACAAGTCAGATGTTAGTAAATAAATAGTAATTAGTCACGTTACATGAGGGTCAACGAGAAAGATTAAACAAGGGTCTGTGGGGAGAATTGGTCATCAATTGGACCTTCCATATCACCCTTTGAACTGGCAATTCCTATGACCAAAGACTAGTCCGAGTAAACAAAATCCACATCCACCACTTTTCTCAGTCAAACTTTCCTTTCCCTTTCTATTTTCTGTGCTTTCCCACATTTCATTCATTCTAAGTGACACCCCCTCTTAAATCCCATCCCCTAACATAACTTAACCCCTTCTTCTCTTGTGCCATGCTTTGTCTTGTTGGTTTAGGCCTAAATTAAAACTTTTCTTTTTCAGAACCAATAACTTATCCTCACGCATTGACGTACCAGAAAGTAACAACCAACAACATGGGAGACCCAAAGAGCATCATAGATGAGCTACTACAAGGTTTGGAGTTGGCAAGGCAGCTCCAAGTGTATCTCCACATGCCCTCTTCGTCCCAAGAAACCCGTGAGCTCTTGATCCAGAAAATCATATCCACATTTGAAAAGGTACTTGAAATGGTAAATTGGACAGGGCCAGTGCCTGCAGGTGATCAGTCATCACAACAGCCCCCACTGCCACTGCCACTGCCTGCAATCCGAATGTCTGACTCTCCTTTGAGCAGTAGTCCCCGCAGTGAAGACTCCGATAGAGATTTCAAAGAACAGGACCCGCTTGCTTTCAAAAAACGGTCCCATTACGATCATATGGCTTTCTCCTCTCATCGCAGAAACACTTTGCCACGATGGACGCGACATATTCGAGTTACATCGGGAATGGCAGTGGAAGGGCCTCTTGATGATGGATATAGTTGGAGAAAATATGGCCAAAAAGACATCCTTGGAGCCATGTATCCTAGGGGCTATTACAGATGTACCCACAGAAATGTTCAAGGCTGCATGGCAACAAAGCAGGTGCAAAGATCTGACGAAGACCCCGCAATTTTTGAAATCACATACCGAGGAAAGCACACCTGCACGGTGGCCAACAACGTGGGTTCTTCTTCATCAATCCCTCCAGAAAACCAAGAACCAAGTTTGCATATCACAAATCTTCAGCAGCAGCAGAATATCCTGCAAAGCCTTGAACAGCAGCAAGCAAACGAACTACTTTTGAGCCTCAGGAAAGGGTTGAGAGTCCAAACAGACAACCTAGATTCCCCTGACCAATCACTACCTCCATTCCATTTCCCTTTATCAACAAATATCAAAATGGAAAGCCAAGTTTTCCCTTCTCCTGTGGTTGAAAACTTCAATTCTCCTTCGTATGTGTCCCCTGCTACATCAGGAATAAGCCACTTTTCGGTGTCTCCAGCTGGGGCGAACAGCTTTGGAGGGAACCCAAATTTGGCAAGTTCTGAGTCTCAGATCAATGATATGATCCCACCCACTACTTCAGCTCCTAACTCATCCACCCTTGGTTTAGAGTTTCCTTTCGACCAGTTTGAATTTGATGGCCAGAACTTCACATTCGATAACCCACAATTTTTTTCTTGAGTAAAGAAGAATACCAATAAAGACAAAAACTAAATTCTTAAAACAAAGTTATAGGATTAGAAGCATATGATGAAAGTTGAAAGACATCAGCAGATGTGGTAACATTCTAGAATTATATGACCCATTAGAAAATTAAGCAAAACCATTTCTATGTATGTCTTAGCTACTTGTGTCGTAGGAATATGCAATTATAAAATTGCTTAGGCAATAAAAATTTCCCTTTATCATTAGGAACAGGTCAAGTTATAACGCAATTTTTCTTTGTTCGTTTTCCCCCCTTTTGCTCATTTTTGGACTTTAATATGAGGGGTTTTCGGCTTCAATTATAGAAATGTACTCACTCCACTGGGCAAACAGCAAACCGGATGATGAAACTGGTCATTTTCTCGAGTCAGAGGAAAGGGGAAAAAAACATAACCCATTGTATTTGTTTCCAATTCTCTATCAAATAAACAAACTGGTTTCCTGAAGAACCAAAAGCAGGGTTAACGTATTTGATCTTTGACCGTGGAAATCTTCACGCGGACAAAAGATAAAGAACCAGCAAACCTCATTATATTTTGTTGAACTACTATGATTTAAGTGGGAGAATAATGCTTTACACATTGAAGTCACCACTGTGATTAAAATTTTAAAATGGAAGAGGTGAAACTACAGCCACAAATAAACATATATATGACATATATCCAGCATTATTCTCAAG	2285	0.4101	MGDPKSIIDELLQGLELARQLQVYLHMPSSSQETRELLIQKIISTFEKVLEMVNWTGPVPAGDQSSQQPPLPLPLPAIRMSDSPLSSSPRSEDSDRDFKEQDPLAFKKRSHYDHMAFSSHRRNTLPRWTRHIRVTSGMAVEGPLDDGYSWRKYGQKDILGAMYPRGYYRCTHRNVQGCMATKQVQRSDEDPAIFEITYRGKHTCTVANNVGSSSSIPPENQEPSLHITNLQQQQNILQSLEQQQANELLLSLRKGLRVQTDNLDSPDQSLPPFHFPLSTNIKMESQVFPSPVVENFNSPSYVSPATSGISHFSVSPAGANSFGGNPNLASSESQINDMIPPTTSAPNSSTLGLEFPFDQFEFDGQNFTFDNPQFFS	376

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste2g03385	376	Pfam	WRKY DNA -binding domain	145	204	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste2g03385	376	Gene3D	WRKY domain	131	207	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pste2g03385	376	FunFam	WRKY transcription factor 53	130	207	-	-
	Pste2g03385	376	SMART	WRKY_cls	144	206	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste2g03385	376	MobiDBLite	consensus disorder prediction	59	99	-	-
	Pste2g03385	376	ProSiteProfiles	WRKY domain profile.	139	207	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste2g03385	376	SUPERFAMILY	WRKY DNA-binding domain	142	206	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pste2g03385	376	MobiDBLite	consensus disorder prediction	323	347	-	-
	Pste2g03385	376	PANTHER	WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED	3	358	IPR044810	GO:0003700

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste2g03385	Pste-Chr2	33933347	33935905	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste2g03385	5	224	WRKY Transcription Factor Family	AT5G24110	42.986	8.46e-51	170

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Pste2g03385		WRKY	3.6e-27	CL0274