Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g03383 GCTAAAAGTAGCATTAACAAGTTATAAAACCCTTGTGGTTCCCGATTCTCGATCCCTTCTCTAAAGTTATGATTATTACTATTACTTGCTAGAGCAGTCTGATACTGCTGCTTCTTCTGTCCTGCTTTGGCTTCAGCCTCTGAGAGATCCCTAGCTATATGCATCTAACGGTTTAAACAAAAAGGGACCATAATTAACATCAAGTAGTAGTAGTAGTTGATGGCGATCGTTTAGTCTCTATCACATCAACTCCCCCTCTCATATTTACACCCTTTTTCTTGATCTTGACAACATCATTTCTTGGTCCCTTTCTCACTCCAAACTCAAATCCGGTACTTCCCACGCAGGTTTTCCAGGGTAGATCGTTCCAATTACAAGCCCCAAAGCATGGACGATAGTTTATGCGATATTTTCCAAGACGGAGAGTTTGGGAGCGGTGGAGACGATCTCTTTGCCATTCTTGAGAGCCTAGAATCGGATTTCCCTCCCATTAACAACGAAGAAACTGTTGCTGTCTCAAGATTGGTGTCCCAGAAGTCTACCTCTTCCAGTGCTCTACAAGATTCTGAAACCGACCTTGAAACCTCACCCAAAACCAAGAGACTCAAGCTTGCTACTCATGACGAACCTAACCCTGATGGACAACAAAAGATGTCTCACATTACCGTTGAGCGCAACAGGAGAAAGCAAATGAACGAACACTTGTCCGTTTTGAGGTCTCTTATGCCTTGCTTTTATGTCAAAAGAGGAGATCAAGCATCGATAATTGGAGGTGTGGTTGATTACATCAACGAGTTGCAACAGGTGCTCCAAGCCCTGGAGGCGAAGAAACAAAGAAAAGTTTACAGCGAAGTCCTAAGCCCTAGGCTTGTTTCAAGCCCAAGGCCTTCACCACTGAGTCCTCGGAAACCCCCTCTGAGCCCGAGACTAAACCTACCCATTAGTCCAAGAACTCCACAACCAGGAAGCCCTTATAGGCCAAGGTTGCAGCAAGGCTACACCAACATCATTTCACCAACCATGTCCAACTCTCTCGACCCTTCTCCAAGCTCTTCTGCTAACTCCTCCATCAACGACAATATCAACGAGCTCGTTGCTAACTCCAAGTCCCCCACTGCTGACGTGGAGGTCAAGTTTTCAGGTCCACACGTTCTTCTCAAAACGGTGTCGCAGCGAATTCCAGGGCAGGCTCTCAAGATTATAACGGCCCTTGAGGATCTTGCGCTCGAAATCCTCCATGTCAACGTTAACTGTGCTGCTGACGATACCATGCTAAACTCATTCACAATCAAGATTGGAGTTGAATGCCAACTGAGTGCGGAAGAACTCGCTCAGCAAATCCAGCAAACATTCTGCTAATTATAAAAAGGGTTATGCCGTTTCAGAGCTCAGAACAAACTCCTCTCTCTCTTCTCTCATCGTGTTGTACGACCTTGCTGTACAAATAACAGAGAACATGGGAAGAGCCATTTAATATCATCCATTTATCATTTTCTTTCTTTTTAATTATTACTGTTTTTCTTTCTTTTTAATTATTACTGTAATTGCTGCCTTAATTCGTCATCACAAGTGTTAGTTAGTTAGTATAGAGTGACTCTCTTGTAATTGACCACCGTCGAGTTTTAATTTGTGTATGAATTAAATTTCTATTTCTC 1655 0.4344 MDDSLCDIFQDGEFGSGGDDLFAILESLESDFPPINNEETVAVSRLVSQKSTSSSALQDSETDLETSPKTKRLKLATHDEPNPDGQQKMSHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQVLQALEAKKQRKVYSEVLSPRLVSSPRPSPLSPRKPPLSPRLNLPISPRTPQPGSPYRPRLQQGYTNIISPTMSNSLDPSPSSSANSSINDNINELVANSKSPTADVEVKFSGPHVLLKTVSQRIPGQALKIITALEDLALEILHVNVNCAADDTMLNSFTIKIGVECQLSAEELAQQIQQTFC 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g03383 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 86 137 IPR011598 GO:0046983
Pste2g03383 323 Pfam Helix-loop-helix DNA-binding domain 87 138 IPR011598 GO:0046983
Pste2g03383 323 FunFam Transcription factor SPEECHLESS 78 152 - -
Pste2g03383 323 PANTHER TRANSCRIPTION FACTOR FAMA 5 322 IPR044283 GO:0003700|GO:0010052
Pste2g03383 323 MobiDBLite consensus disorder prediction 159 228 - -
Pste2g03383 323 MobiDBLite consensus disorder prediction 195 228 - -
Pste2g03383 323 MobiDBLite consensus disorder prediction 64 88 - -
Pste2g03383 323 SMART finulus 92 143 IPR011598 GO:0046983
Pste2g03383 323 MobiDBLite consensus disorder prediction 165 194 - -
Pste2g03383 323 CDD bHLH_AtFAMA_like 89 160 - -
Pste2g03383 323 Gene3D - 79 159 IPR036638 GO:0046983
Pste2g03383 323 Coils Coil 130 150 - -
Pste2g03383 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 85 160 IPR036638 GO:0046983
Pste2g03383 323 MobiDBLite consensus disorder prediction 52 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g03383 Pste-Chr2 33923823 33929336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g03383 1 303 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 52.857 3.08e-92 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste2g03383 HLH 1.6e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g03383 2 33923823 33929336 Pste2g03383 2 33923823 33929336 ECH