LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste2g03367	CAGCCTCCTAATAGTACGGCATAAAATAATATGTATCCTTGGCCCTTGGGGTTGTAATTTGTAAATGATTATGGGATGAGTTTCTCTTACTTGAATTGCATGTGGCACTGCTGTTGTCGCAAGCAAATACAGCTCATCTTCCATCACTACCAATACACCATCATTGCAACGACCCCAGTTTGGATTTCCTTCCTTTAACTGCTTCCCAAACAAGATGGACCATGTATCTGATACGGTCCCGGACCTACTGCTTTTCTAGCACTCTTTTCTTTGCTCTTCAAGATTCCTACTATGGTTTTTTAGGACATTCTACTCTCTGTCTCTGGATCTTTAACTAGTTTGCTCGTTTTTCGGATCAAGAAGTGAGTTTTTGGTTTCTTGTAAAGGTAACCAATATCTTGAGTAGAAGGGTCTTGCTTTACATCCAAGTTGTGCAGTGTTGATTTTCTTCTCTCTTGGAGCCAGAAAATGGACAAGAGGCTGCCCCTCTTGTTCCTTTTTTCAGCAGTCTTGATTAGTGTTGTGGCTGAACCAGTGGAAGATAAACGAGCTTTGCTTGATTTCCTTGACAGCATGAATCACTCTCCTCATGTTAACTGGGAAGAGAACACTTCTGTTTGCCAAAGCTGGAGAGGAGTGATTTGCAACTCTGACGAATCCCGTGTTATAGCCATTCGATTGCCAGGAGCAGGGTTGAGTGGTCCAATCCCACCCAACACTCTCAACCGCCTCACAGCACTTGAGATTGTGAGTCTTAGATCAAATGGTATAACAGGCCCTTTTCCCGATGGCTTCTCTGAGCTGAAAAATTTAACAAGCCTCTATCTCCAATCCAACAAGTTTTCTGGGCCACTGCCATTGGATTTTTCAGTTTGGAATAATCTTAGTGTTGTTAATTTGTCCAACAATTCTTTCAATGGGAGTATCCCCTTTTCAATTTCAAATCTGACTCATCTTACTTCATTAGTCCTTGCCAACAACTCCCTTTCGGGTCAGATTCCTGATCTCAATATTCCTAGCCTGCAAGAGCTGAATTTAGCCAACAATAACCTTAGTGGGGTTGTGCCTAAATCCCTTCTTAGATTTCCTACTTCGGCCTTTGCTGGTAATAATCTTAAATCACAAGATGCACTACCTCCAGCTTTTCCTATGGAGCCACCGGTTTCCCTTCCAGCAAAGAAATCCAAAGGACTTAGTGAACCTGCATTGTTGGGTATCATCATTGGTGCTAGTGTGCTGGGGTTTGTGGTGATTGCAGGTTTCATGATTGTGTGCTGCTATCAAAATGCAAATGTGGATGTTCAAGCAGTGAAATCCCAGAAAAAACAAACCTCTCTGAAGACAGAATCTTCTGGAAGTCAAGACAAAAACCACAAAATTGTCTTCTTTGAAGGTTGCAATCTTGCATTTGATTTAGAGGACTTGCTGAGGGCGTCTGCTGAGATTCTCGGAAAGGGTACCTTTGGCATGACATATAAAGCTGCTCTAGAGGATGCAACAACTGTGGCGGTCAAGAGGTTGAAGGAGGTCACAGTTGGAAAACGGGATTTTGAACAGCAGATGGAGATGGTGGGGAAAATCAAGCACGAAAATGTGGATGCAGTGAGGGCCTATTACTATTCGAAGGAGGAGAAACTCGTAGTGTATGATTACTATCAACAAGGCAGCGTTTCAGCAATGCTACATGGCAAAGGAGGGGAAGGCAGAAGTTCTTTAGACTGGGATAGCCGCTTGAGAATTGCAGTAGGTGCAGCCAGAGGAATTGCTTACATCCATGCTCAACATGGAGGGAAACTCGTCCATGGAAACATAAAAGCCTCAAACATCTTCCTCAATTCACAAGGATATGGATGCATATCTGATGTTGGCTTGGCAACATTGATGAGTCCAATACCAACCCCAACAATGAGAGCAACCGGATACCGTGCACCGGAAGTAACAGACACGCGCAAAGCAGCCCATGCAGCTGATGTATACAGCTTTGGAGTGCTGCTGCTTGAGCTTCTGACTGGGAAGTCCCCCATAAACAACACAGAAGGTGAGCAGGTTGTTCACTTGGTTAGATGGGTGAATTCTGTGGTTAGAGAGGAGTGGACTGCAGAAGTGTTTGATGTAGATCTGTTGAGGTATCCAAATATAGAGGAAGAAATGGTGGGGATGCTACAAATAGGGATGGCTTGTGCTGCAAGAACACCGGATCAGAGACCAAAGATGCTTGATGTGGTTAGAATGATGGAGGACATTCGTCGTGTAAATACACCAAATCTACCATCCACCGAGTCTAGATCAGAAGTTTCTACACCCACCCCTCGTGCGGTTGATATACCATCTACCTCTACCTCTGTTCAACAATGA	2355	0.4399	MDKRLPLLFLFSAVLISVVAEPVEDKRALLDFLDSMNHSPHVNWEENTSVCQSWRGVICNSDESRVIAIRLPGAGLSGPIPPNTLNRLTALEIVSLRSNGITGPFPDGFSELKNLTSLYLQSNKFSGPLPLDFSVWNNLSVVNLSNNSFNGSIPFSISNLTHLTSLVLANNSLSGQIPDLNIPSLQELNLANNNLSGVVPKSLLRFPTSAFAGNNLKSQDALPPAFPMEPPVSLPAKKSKGLSEPALLGIIIGASVLGFVVIAGFMIVCCYQNANVDVQAVKSQKKQTSLKTESSGSQDKNHKIVFFEGCNLAFDLEDLLRASAEILGKGTFGMTYKAALEDATTVAVKRLKEVTVGKRDFEQQMEMVGKIKHENVDAVRAYYYSKEEKLVVYDYYQQGSVSAMLHGKGGEGRSSLDWDSRLRIAVGAARGIAYIHAQHGGKLVHGNIKASNIFLNSQGYGCISDVGLATLMSPIPTPTMRATGYRAPEVTDTRKAAHAADVYSFGVLLLELLTGKSPINNTEGEQVVHLVRWVNSVVREEWTAEVFDVDLLRYPNIEEEMVGMLQIGMACAARTPDQRPKMLDVVRMMEDIRRVNTPNLPSTESRSEVSTPTPRAVDIPSTSTSVQQ	628

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste2g03367	628	PANTHER	OS05G0588300 PROTEIN	7	602	-	-
	Pste2g03367	628	Gene3D	Transferase(Phosphotransferase) domain 1	397	610	-	-
	Pste2g03367	628	SUPERFAMILY	L domain-like	38	205	-	-
	Pste2g03367	628	FunFam	Probable inactive receptor kinase RLK902	22	181	-	-
	Pste2g03367	628	Pfam	Leucine rich repeat N-terminal domain	24	60	IPR013210	-
	Pste2g03367	628	Gene3D	Ribonuclease Inhibitor	23	227	IPR032675	-
	Pste2g03367	628	ProSitePatterns	Protein kinases ATP-binding region signature.	327	358	IPR017441	GO:0005524
	Pste2g03367	628	MobiDBLite	consensus disorder prediction	596	628	-	-
	Pste2g03367	628	FunFam	pollen receptor-like kinase 1	290	395	-	-
	Pste2g03367	628	Gene3D	Phosphorylase Kinase; domain 1	285	395	-	-
	Pste2g03367	628	ProSiteProfiles	Protein kinase domain profile.	321	592	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste2g03367	628	Pfam	Protein tyrosine and serine/threonine kinase	325	586	IPR001245	GO:0004672\|GO:0006468
	Pste2g03367	628	MobiDBLite	consensus disorder prediction	594	628	-	-
	Pste2g03367	628	SUPERFAMILY	Protein kinase-like (PK-like)	325	589	IPR011009	-
	Pste2g03367	628	ProSiteProfiles	Leucine-rich repeat profile.	184	205	IPR001611	GO:0005515
	Pste2g03367	628	FunFam	protein STRUBBELIG-RECEPTOR FAMILY 8	396	601	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste2g03367	Pste-Chr2	33739853	33744062	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste2g03367	20	613	Receptor kinase-like Gene Family	AT4G23740	57.351	0.0	684

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-III	Pste2g03367		PK_Tyr_Ser-Thr	1.2e-33	CL0016